Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41850

Metabolite ID
P41850
Deionized mass
372.0800 Da
Average m/z
373.0892
Average RT
20.9760
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
43
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

43 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)6.261e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)3.738e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.86e-11
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.817e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)6.45e-13
Glyma.01G037200 hypothetical protein NA 1Chr01:3946315–3948100 (-)1.767e-12
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)5.575e-12
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)2.335e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)4.828e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)4.975e-13
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)9.56e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.081e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.394e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.394e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.394e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.307e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.491e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.785e-12
Glyma.08G136700 hypothetical protein NA 1Chr08:10457207–10460163 (-)2.213e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.166e-12
Glyma.08G294800 hypothetical protein AT1G59710:AT1G59710:actin cross-linking protein (DUF569) 1Chr08:40993962–41001629 (+)5.82e-12
Glyma.08G294900 hypothetical protein AT1G59720:CRR28:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:41002768–41005138 (-)1.179e-11
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)1.399e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)5.087e-14
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.081e-12
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)1.952e-11
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)3.487e-12
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)3.487e-12
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)3.487e-12
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)2.712e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)2.394e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.72e-13
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)4.668e-11
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)5.496e-12
Glyma.15G129700 hypothetical protein NA 1Chr15:10403004–10408818 (-)2.137e-11
Glyma.15G136300 hypothetical protein AT3G06480:AT3G06480:DEAD box RNA helicase family protein 1Chr15:11013168–11021140 (+)3.593e-11
Glyma.15G136600 hypothetical protein AT3G17300:EMB2786:COMPLEX 1 LYR-like protein 1Chr15:11049771–11051844 (-)2.326e-11
Glyma.15G150300 hypothetical protein AT5G49130:AT5G49130:MATE efflux family protein 1Chr15:12416065–12418420 (-)8.703e-12
Glyma.15G150400 hypothetical protein AT3G06840:AT3G06840:uncharacterized protein 1Chr15:12436393–12437800 (-)1.046e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)7.892e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)9.348e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)1.485e-11
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)9.787e-11