Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41677

Metabolite ID
P41677
Deionized mass
578.2743 Da
Average m/z
579.2788
Average RT
20.9045
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
57
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

57 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.314e-12
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)5.704e-11
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)8.999e-13
Glyma.08G182500 hypothetical protein NA 2Chr08:14639429–14643788 (+)4.073e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.257e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.257e-15
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.386e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.314e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.644e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.196e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.196e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.062e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)9.019e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.077e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)7.522e-12
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)1.313e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)1.313e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)5.704e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)5.704e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.49e-11
Glyma.08G182000 hypothetical protein NA 1Chr08:14601875–14604750 (+)2.614e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)7.817e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)7.817e-11
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)8.911e-12
Glyma.11G241400 hypothetical protein AT4G40000:AT4G40000:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr11:33556332–33563163 (-)2.112e-11
Glyma.11G241900 hypothetical protein NA 1Chr11:33589346–33594428 (-)2.112e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.24e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.24e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.257e-15
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)3.642e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.064e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.186e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)3.988e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.096e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.448e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.331e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)5.155e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.652e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.442e-13
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)5.962e-12
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)5.962e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.978e-19
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)4.213e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)3.132e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)9.605e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.411e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.411e-12
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)6.02e-11
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)9.201e-11
Glyma.18G201900 hypothetical protein NA 1Chr18:48192545–48196624 (-)4.862e-13
Glyma.18G204200 hypothetical protein NA 1Chr18:48697660–48700908 (+)7.361e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)7.733e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)7.732e-12
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)6.276e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)9.806e-13
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)5.211e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)9.038e-11