Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41604

Metabolite ID
P41604
Deionized mass
561.7429 Da
Average m/z
562.7470
Average RT
20.8712
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
128
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

128 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.002e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)5.659e-16
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)6.614e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)9.612e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.868e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.886e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.348e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)4.393e-12
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)4.393e-12
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)4.393e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)3.904e-14
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)4.907e-14
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)7.192e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.948e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.948e-16
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.349e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.554e-12
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 2Chr16:34364037–34367765 (-)6.078e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.002e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.741e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)6.1e-15
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)1.623e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.693e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)1.777e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.767e-13
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.326e-12
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.509e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.976e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.885e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)2.858e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)2.858e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)2.858e-12
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)1.478e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.743e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.686e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)5.653e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.083e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.05e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)7.686e-14
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)7.151e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.439e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.212e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.348e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.348e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.348e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.348e-11
Glyma.08G330400 hypothetical protein NA 1Chr08:44820327–44823668 (+)9.538e-15
Glyma.08G330500 hypothetical protein AT3G07680:p24beta2:emp24/gp25L/p24 family/GOLD family protein 1Chr08:44824324–44827127 (-)9.537e-15
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)1.12e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.677e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)9.494e-12
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)4.65e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.257e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)3.14e-11
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)8.765e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.149e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)4.393e-12
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)4.393e-12
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)4.393e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)4.393e-12
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)4.393e-12
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)5.533e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.295e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.295e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.295e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.295e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.54e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)5.52e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.662e-11
Glyma.11G239000 hypothetical protein AT5G10120:AT5G10120:Ethylene insensitive 3 family protein 1Chr11:33337797–33339122 (-)2.159e-11
Glyma.12G098000 hypothetical protein NA 1Chr12:8432078–8439545 (+)3.093e-12
Glyma.12G098300 hypothetical protein NA 1Chr12:8458112–8459817 (+)3.093e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.333e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.333e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.13e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.13e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.797e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)7.768e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)7.768e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.174e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)7.192e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)6.73e-12
Glyma.12G228000 hypothetical protein AT1G53210:AT1G53210:sodium/calcium exchanger family protein / calcium-binding EF hand family protein 1Chr12:38789187–38797498 (+)8.493e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)3.824e-13
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)6.614e-14
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.136e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.854e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.854e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.948e-16
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.316e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)5.715e-14
Glyma.14G194100 hypothetical protein AT5G58620:AT5G58620:zinc finger (CCCH-type) family protein 1Chr14:45920719–45923885 (+)4.187e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.349e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.42e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.719e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.42e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.42e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)6.684e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.789e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)9.612e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)9.612e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)9.612e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)9.612e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.25e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.198e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.155e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.873e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.049e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.347e-14
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)1.034e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.132e-12
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)1.655e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)8.069e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.248e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.357e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.357e-13
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.868e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.277e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.277e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.991e-12
Glyma.20G098200 hypothetical protein AT1G56345:AT1G56345:Pseudouridine synthase family protein 1Chr20:34140611–34141832 (+)2.569e-11
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)1.944e-11
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)1.01e-13
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.455e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.17e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.693e-18
Glyma.20G107300 hypothetical protein AT2G16920:UBC23:ubiquitin-conjugating enzyme 23 1Chr20:34991156–34999277 (+)3.166e-11
Glyma.20G108700 hypothetical protein AT1G09290:AT1G09290:uncharacterized protein 1Chr20:35109869–35115132 (-)8.498e-11