Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41603

Metabolite ID
P41603
Deionized mass
356.1940 Da
Average m/z
357.2010
Average RT
20.8710
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
149
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

149 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)4.003e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)6.775e-13
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)8.59e-13
Glyma.02G188300 hypothetical protein NA 2Chr02:35008552–35027979 (-)3.229e-11
Glyma.02G200700 hypothetical protein AT3G11560:AT3G11560:LETM1-like protein__AT5G06220:AT5G06220:LETM1-like protein 2Chr02:38435454–38459254 (-)6.175e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)1.26e-14
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.038e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)9.647e-12
Glyma.13G183400 hypothetical protein NA 2Chr13:29666942–29670201 (+)6.528e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.295e-19
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.267e-15
Glyma.14G176900 SGF14K 14-3-3 protein SGF14k AT1G78300:GRF2:ral regulatory factor 2 2Chr14:43637893–43642553 (+)2.485e-11
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 2Chr14:46291986–46298337 (+)6.128e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)5.97e-15
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 2Chr14:46728613–46733836 (+)9.775e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)8.502e-13
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.772e-11
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)8.13e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)4.003e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.428e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)8.2e-11
Glyma.02G200600 hypothetical protein AT3G11570:TBL8:TRICHOME BIREFRINGENCE-LIKE 8__AT5G06230:TBL9:TRICHOME BIREFRINGENCE-LIKE 9 1Chr02:38432334–38436063 (+)6.175e-12
Glyma.02G201100 hypothetical protein AT5G06200:CASP4:Uncharacterized protein family (UPF0497) 1Chr02:38497390–38499369 (-)6.175e-12
Glyma.02G201400 hypothetical protein AT5G06140:SNX1:sorting nexin 1 1Chr02:38539394–38547251 (+)6.175e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)4.362e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.308e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.16e-14
Glyma.03G041900 hypothetical protein NA 1Chr03:5313339–5315847 (-)6.114e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.411e-14
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)8.318e-13
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)8.318e-13
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)2.818e-13
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)7.54e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)4.748e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.248e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)7.049e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.504e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)4.48e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.824e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.701e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.028e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.594e-14
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)9.622e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)3.205e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)3.205e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)3.205e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)2.903e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)2.903e-11
Glyma.06G129800 hypothetical protein AT5G53030:AT5G53030:uncharacterized protein 1Chr06:10667029–10669377 (+)4.606e-11
Glyma.06G130100 hypothetical protein AT3G49290:ABIL2:ABL interactor-like protein 2 1Chr06:10695256–10699675 (+)4.606e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)2.082e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.141e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)5.803e-12
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)5.803e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)6.775e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)6.775e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.389e-11
Glyma.07G078000 hypothetical protein NA 1Chr07:7121636–7126695 (+)9.887e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)6.68e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)6.944e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)8.59e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)8.59e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)8.59e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)8.59e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.8e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)5.435e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)8.105e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.98e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.98e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.009e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)4.957e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)5.208e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.615e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)2.016e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)9.819e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)3.239e-13
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)3.239e-13
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)3.239e-13
Glyma.11G241000 hypothetical protein AT4G39960:AT4G39960:Molecular chaperone Hsp40/DnaJ family protein 1Chr11:33526493–33531210 (+)9.619e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)8.511e-12
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)3.934e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)9.37e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)9.37e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)5.542e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.7e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.7e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.467e-13
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)6.151e-14
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.466e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.531e-15
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)8.013e-12
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)8.013e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)3.078e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.267e-15
Glyma.14G197800 hypothetical protein AT2G30120:AT2G30120:protein FLC EXPRESSOR 1Chr14:46303686–46308920 (+)2.701e-11
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)6.128e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)5.97e-15
Glyma.14G202400 hypothetical protein AT1G21480:AT1G21480:Exostosin family protein 1Chr14:46768802–46772377 (+)8.102e-11
Glyma.14G202500 hypothetical protein NA 1Chr14:46773824–46775761 (+)8.102e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)1.485e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.583e-13
Glyma.15G047100 hypothetical protein AT1G71240:AT1G71240:chromosome-partitioning protein, putative (DUF639) 1Chr15:3736217–3746037 (+)3.864e-11
Glyma.15G047800 hypothetical protein AT1G33270:AT1G33270:Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein 1Chr15:3777567–3783739 (+)3.864e-11
Glyma.15G049800 hypothetical protein NA 1Chr15:3927843–3933656 (-)3.524e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.482e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.188e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.482e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.482e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.256e-17
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.192e-13
Glyma.15G125700 hypothetical protein AT1G55270:AT1G55270:Galactose oxidase/kelch repeat superfamily protein 1Chr15:9962401–9965136 (+)6.935e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)6.002e-12
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)9.873e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)5.557e-12
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)5.557e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)6.852e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.46e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)6.229e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)3.305e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.179e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.457e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.398e-13
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)3.021e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)3.021e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)1.706e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)1.706e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)5.608e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.493e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.379e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.379e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)9.679e-11
Glyma.17G251800 hypothetical protein NA 1Chr17:40633579–40636068 (+)4.994e-12
Glyma.17G251900 hypothetical protein AT1G19600:AT1G19600:pfkB-like carbohydrate kinase family protein 1Chr17:40641019–40644794 (+)4.994e-12
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)3.667e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)7.952e-12
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.114e-11
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)2.156e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.26e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.26e-13
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.042e-13
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)6.875e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.861e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)6.531e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)4.548e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.924e-11
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)5.581e-13
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)6.701e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.172e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)3.992e-11