Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41346

Metabolite ID
P41346
Deionized mass
108.0933 Da
Average m/z
109.1004
Average RT
20.7190
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
70
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

70 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 3Chr19:1134716–1143232 (+)4.164e-12
Glyma.19G037200 hypothetical protein AT5G15680:AT5G15680:ARM repeat superfamily protein 3Chr19:5178930–5212367 (+)1.696e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 2Chr02:5645621–5648965 (+)2.705e-13
Glyma.03G035500 hypothetical protein NA 2Chr03:4289118–4294184 (+)2.949e-12
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)1.224e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)2.581e-12
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)2.131e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.415e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)2.834e-14
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)1.278e-12
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)3.812e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)5.536e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.211e-13
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)4.908e-11
Glyma.03G073300 hypothetical protein AT1G79210:AT1G79210:N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein 1Chr03:17770362–17785644 (+)7.855e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.843e-11
Glyma.04G082800 hypothetical protein NA 1Chr04:6977997–6983005 (-)3.862e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.148e-12
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.959e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.452e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.991e-18
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.184e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.184e-12
Glyma.08G132700 hypothetical protein NA 1Chr08:10163807–10167725 (-)5.85e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.436e-11
Glyma.09G233700 hypothetical protein AT1G33430:AT1G33430:Galactosyltransferase family protein 1Chr09:45632775–45635630 (-)6.551e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)4.817e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.34e-11
Glyma.10G257500 hypothetical protein NA 1Chr10:48386988–48389180 (-)3.723e-11
Glyma.10G264300 Mediator of RNA polymerase II transcription subunit 21 AT4G04780:MED21:mediator 21 1Chr10:48858818–48862498 (-)2.324e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)8.249e-13
Glyma.10G266400 hypothetical protein NA 1Chr10:48984735–48993690 (+)7.515e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)7.977e-17
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)7.977e-17
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.753e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.753e-13
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)4.298e-13
Glyma.12G186300 hypothetical protein NA 1Chr12:34717587–34719271 (+)3.906e-11
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)3.906e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.036e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.642e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.642e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.643e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.46e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.906e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)8.141e-13
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)1.72e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.791e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.763e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)3.274e-11
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)1.133e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)9.429e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.981e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.048e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.39e-12
Glyma.18G125300 hypothetical protein NA 1Chr18:16402018–16411532 (-)4.653e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.107e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.581e-12
Glyma.19G031200 hypothetical protein NA 1Chr19:3870532–3874170 (-)1.129e-11
Glyma.19G032500 hypothetical protein NA 1Chr19:4140729–4141955 (-)1.914e-12
Glyma.19G032800 hypothetical protein NA 1Chr19:4196959–4199265 (-)1.173e-12
Glyma.19G037400 hypothetical protein AT5G38820:AT5G38820:Transmembrane amino acid transporter family protein 1Chr19:5224298–5228610 (-)1.696e-11
Glyma.19G038000 hypothetical protein AT3G02350:GAUT9:galacturonosyltransferase 9 1Chr19:5321094–5324327 (+)1.696e-11
Glyma.19G038300 hypothetical protein NA 1Chr19:5381177–5383149 (+)1.696e-11
Glyma.19G038400 hypothetical protein AT3G02360:AT3G02360:6-phosphogluconate dehydrogenase family protein 1Chr19:5386122–5388865 (+)1.696e-11
Glyma.19G040100 hypothetical protein AT3G02460:AT3G02460:Ypt/Rab-GAP domain of gyp1p superfamily protein 1Chr19:5773912–5781906 (-)3.342e-11
Glyma.19G041000 hypothetical protein NA 1Chr19:5964641–5965947 (-)3.342e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)6.365e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.631e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.624e-12