Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41115

Metabolite ID
P41115
Deionized mass
491.7361 Da
Average m/z
492.7438
Average RT
20.5654
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
102
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

102 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)7.835e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)1.273e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)2.037e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.62e-15
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.62e-15
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.897e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)3.913e-11
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)1.313e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.365e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.241e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)2.699e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)1.005e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)8.58e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)6.175e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)8.346e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)8.346e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.842e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)7.504e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)7.504e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)7.504e-11
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)3.794e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)9.585e-12
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)3.962e-13
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)5.798e-16
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.836e-15
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.769e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.928e-11
Glyma.06G081600 hypothetical protein AT5G11490:AT5G11490:adaptin family protein 1Chr06:6273644–6283819 (+)7.639e-11
Glyma.06G085900 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr06:6617102–6622706 (-)1.659e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.031e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.031e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.031e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.353e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.844e-12
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)2.45e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)5.429e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)5.429e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)3.957e-11
Glyma.09G065900 hypothetical protein NA 1Chr09:6419980–6421918 (+)1.442e-11
Glyma.09G066000 hypothetical protein NA 1Chr09:6431656–6439981 (-)1.442e-11
Glyma.09G066200 hypothetical protein AT5G57030:LUT2:Lycopene beta/epsilon cyclase protein 1Chr09:6475361–6486120 (+)1.442e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.8e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.962e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.006e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.491e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.454e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.454e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.454e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.454e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.7e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.365e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)3.167e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.956e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.188e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.531e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.531e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.748e-15
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.748e-15
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.451e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.85e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.341e-14
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.341e-14
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.62e-15
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.935e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.476e-13
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)4.292e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)4.292e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)5.255e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.976e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.021e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.977e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.977e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)6.678e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)6.678e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)4.93e-12
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.054e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.421e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.21e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)3.708e-13
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)3.705e-13
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.617e-16
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)3.169e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)1.058e-14
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)8.341e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)7.835e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.718e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.718e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)5.441e-11
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)4.395e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)1.273e-12
Glyma.17G218800 Peptidyl-prolyl cis-trans isomerase CYP57 AT4G33060:AT4G33060:Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein 1Chr17:37027171–37033720 (-)1.997e-11
Glyma.18G251900 hypothetical protein AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… 1Chr18:53855786–53862322 (-)3.685e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.316e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.316e-12
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)2.96e-11
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)2.96e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.963e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)2.44e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)8.665e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)8.695e-12
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.991e-13
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)3.194e-11