Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P41022

Metabolite ID
P41022
Deionized mass
162.0523 Da
Average m/z
325.1121
Average RT
20.5176
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.812e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)4.504e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.576e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.576e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.575e-14
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)1.639e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.457e-12
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.657e-13
Glyma.01G046600 hypothetical protein AT1G14280:PKS2:phytochrome kinase substrate 2 1Chr01:5379316–5382027 (-)2.887e-13
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.671e-12
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)5.64e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)5.89e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.104e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)6.957e-14
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.722e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.294e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.991e-11
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)6.605e-12
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)6.605e-12
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)6.606e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.379e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.673e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.673e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.48e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.545e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.545e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.545e-14
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)9.211e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.292e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.103e-13
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.812e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.812e-12
Glyma.07G074800 hypothetical protein AT3G16840:AT3G16840:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr07:6806841–6815545 (-)2.155e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.981e-11
Glyma.08G213200 hypothetical protein AT3G15890:AT3G15890:Protein kinase superfamily protein 1Chr08:17200661–17204670 (+)4.448e-11
Glyma.08G213600 hypothetical protein AT1G48900:AT1G48900:Signal recognition particle, SRP54 subunit protein__AT5G49500:AT5G49500:Signal recognition particle… 1Chr08:17239144–17242612 (-)4.448e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)2.325e-12
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.576e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.576e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.576e-14
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.576e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.576e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)3.228e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.909e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.909e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.909e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.909e-13
Glyma.12G001400 hypothetical protein AT1G72090:AT1G72090:Methylthiotransferase 1Chr12:113763–118480 (+)5.441e-12
Glyma.12G001600 PM27 seed maturation protein PM27 AT1G22600:AT1G22600:Late embryosis abundant protein (LEA) family protein__AT1G72100:AT1G72100:late embryosis abundant d… 1Chr12:127545–128932 (+)5.441e-12
Glyma.12G001700 hypothetical protein AT1G22570:AT1G22570:Major facilitator superfamily protein__AT1G22550:AT1G22550:Major facilitator superfamily protein 1Chr12:132389–134935 (+)5.441e-12
Glyma.12G002400 hypothetical protein AT5G47850:CCR4:CRINKLY4 related 4 1Chr12:197288–200229 (+)3.111e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)7.532e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.109e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)3.005e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)3.005e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)3.005e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.125e-13
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)2.329e-12
Glyma.14G083200 hypothetical protein NA 1Chr14:7249145–7256947 (-)6.938e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.657e-11
Glyma.16G031600 hypothetical protein NA 1Chr16:2964569–2985013 (+)1.057e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.475e-12
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)8.336e-11
Glyma.18G006800 hypothetical protein AT1G67370:ASY1:DNA-binding HORMA family protein 1Chr18:495989–502111 (-)5.841e-11
Glyma.18G213500 hypothetical protein AT2G38550:AT2G38550:Transmembrane proteins 14C 1Chr18:50044567–50050213 (-)5.125e-11
Glyma.19G004700 Protein RST1 AT3G27670:RST1:ARM repeat superfamily protein 1Chr19:379721–392669 (-)6.304e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.597e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.597e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.472e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)4.756e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)8.823e-14
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.022e-13
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)2.513e-15
Glyma.20G110200 hypothetical protein AT5G08415:AT5G08415:Radical SAM superfamily protein 1Chr20:35235204–35239070 (-)7.057e-11