Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40998

Metabolite ID
P40998
Deionized mass
260.1047 Da
Average m/z
261.1110
Average RT
20.4995
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.15G257100 hypothetical protein AT1G56070:LOS1:Ribosomal protein S5/Elongation factor G/III/V family protein 3Chr15:48661607–48665946 (-)2.117e-12
Glyma.16G137600 hypothetical protein NA 3Chr16:29468438–29472890 (-)1.368e-12
Glyma.18G226300 hypothetical protein NA 3Chr18:51471540–51498344 (+)6.33e-12
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)8.558e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)4.11e-11
Glyma.16G135000 hypothetical protein AT3G50910:AT3G50910:netrin receptor DCC 2Chr16:29248080–29253429 (-)4.463e-11
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.479e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)8.555e-12
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)4.829e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)8.558e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.363e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)7.034e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)3.531e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)8.6e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)5.519e-12
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)5.519e-12
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)5.519e-12
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)5.519e-12
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)5.519e-12
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)5.519e-12
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)5.519e-12
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)4.11e-11
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)8.602e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.575e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)3.092e-12
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.36e-12
Glyma.04G192000 hypothetical protein AT3G48430:REF6:relative of early flowering 6 1Chr04:46279239–46297477 (-)4.931e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.1e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)9.642e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.548e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.651e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.144e-15
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)4.445e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)4.445e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)4.445e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.316e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.316e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)2.394e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.591e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)5.857e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)7.766e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.907e-14
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.982e-13
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)3.331e-17
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)7.895e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)6.848e-12
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)1.803e-14
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.803e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)9.236e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)9.236e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)9.236e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)9.236e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.119e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)5.373e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.599e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.717e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.013e-15
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.416e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.725e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.416e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.416e-14
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.627e-11
Glyma.15G257500 hypothetical protein NA 1Chr15:48713244–48717192 (+)6.34e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.389e-12
Glyma.16G137000 hypothetical protein NA 1Chr16:29418205–29421765 (-)2.716e-11
Glyma.16G137100 hypothetical protein NA 1Chr16:29421091–29421534 (+)2.716e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.15e-13
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)4.979e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.963e-13
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.83e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.019e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)1.074e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)3.422e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.528e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.479e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)7.082e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.315e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.316e-11