Overview Annotation GWAS Evidence Associated genes

P40997

Metabolite ID
P40997
Deionized mass
298.1892 Da
Average m/z
299.1941
Average RT
20.4995
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
155
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

155 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.908e-11
Glyma.09G053800 hypothetical protein NA 3Chr09:4737413–4755632 (-)1.014e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)2.362e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.015e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)7.962e-18
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.551e-12
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)6.207e-12
Glyma.01G166400 hypothetical protein AT4G36080:AT4G36080:phosphotransferases/inositol or phosphatidylinositol kinase 2Chr01:50404781–50436297 (-)8.516e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 2Chr05:32421116–32425198 (-)2.075e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.107e-13
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.568e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.406e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.261e-13
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)1.525e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)9.908e-17
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.101e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)2.471e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.908e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.632e-11
Glyma.01G166300 hypothetical protein AT3G51230:AT3G51230:chalcone-flavanone isomerase family protein 1Chr01:50402188–50404181 (+)8.516e-11
Glyma.01G166600 hypothetical protein AT2G18000:TAF14:TBP-associated factor 14 1Chr01:50443699–50446896 (-)8.516e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.225e-15
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.225e-15
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)2.486e-11
Glyma.02G113000 hypothetical protein AT1G69370:CM3:chorismate mutase 3 1Chr02:10939096–10941983 (-)7.509e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)5.307e-11
Glyma.02G204500 hypothetical protein NA 1Chr02:38980978–38982630 (-)4.617e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)6.712e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)2.892e-17
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.594e-14
Glyma.03G046000 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein 1Chr03:5848597–5849782 (-)9.678e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.059e-12
Glyma.04G220400 hypothetical protein AT5G10020:AT5G10020:Leucine-rich receptor-like protein kinase family protein 1Chr04:49102263–49108229 (+)4.64e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.732e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)3.747e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)3.747e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.461e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.067e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.067e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.067e-15
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)2.13e-12
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)4.405e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)3.834e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.381e-19
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.701e-17
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.135e-13
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.093e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.093e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.093e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)6.357e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)6.357e-12
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.5e-11
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.442e-12
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)5.005e-11
Glyma.06G190300 hypothetical protein AT1G74730:AT1G74730:transmembrane protein, putative (DUF1118) 1Chr06:16709212–16710732 (-)6.432e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)9.566e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)4.21e-13
Glyma.08G112600 hypothetical protein NA 1Chr08:8660670–8663379 (-)5.939e-11
Glyma.08G112700 hypothetical protein NA 1Chr08:8661027–8661191 (+)5.939e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.177e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.107e-13
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.107e-13
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.107e-13
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.107e-13
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)2.963e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.085e-13
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)8.076e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.33e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)9.19e-12
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)6.786e-13
Glyma.09G019800 VAMP721D vesicle-associated membrane protein 721d NA 1Chr09:1540660–1547761 (+)1.585e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.158e-16
Glyma.09G052900 hypothetical protein NA 1Chr09:4652312–4653046 (+)1.293e-11
Glyma.09G054100 hypothetical protein NA 1Chr09:4780506–4788669 (-)1.293e-11
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)8.073e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)8.072e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.342e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)3.3e-12
Glyma.09G110000 hypothetical protein NA 1Chr09:21593730–21602127 (+)3.356e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)1.141e-12
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)3.44e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.013e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)2.802e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.346e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.346e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.346e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.346e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)5.872e-14
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.65e-14
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.826e-11
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)5.507e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.036e-12
Glyma.11G070700 hypothetical protein NA 1Chr11:5282926–5287258 (+)5.423e-11
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)2.121e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)1.234e-13
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)7.798e-12
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)1.1e-11
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)4.19e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.501e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.501e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.445e-13
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.261e-13
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)9.855e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)4.676e-13
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)2.533e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)2.533e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)3.612e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.716e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)2.362e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.339e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.726e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.926e-12
Glyma.13G318900 hypothetical protein AT2G27810:NAT12:nucleobase-ascorbate transporter 12 1Chr13:41337944–41344534 (+)2.681e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)2.364e-14
Glyma.13G319700 hypothetical protein NA 1Chr13:41414504–41418957 (+)1.926e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)7.216e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.365e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)2.192e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.184e-14
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)3.056e-12
Glyma.15G262200 hypothetical protein AT3G12760:AT3G12760:defective in cullin neddylation protein 1Chr15:49465185–49472595 (-)1.493e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.015e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.015e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.015e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.015e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)1.624e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.049e-12
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.317e-14
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.352e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.551e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.551e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.899e-13
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.606e-19
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)8.478e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.653e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.937e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.224e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.224e-11
Glyma.17G214600 hypothetical protein NA 1Chr17:36049053–36054871 (-)3.948e-12
Glyma.17G215300 hypothetical protein AT5G25265:AT5G25265:Hyp O-arabinosyltransferase-like protein 1Chr17:36142245–36146771 (-)8.701e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3e-14
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.101e-11
Glyma.17G250700 hypothetical protein AT1G75210:AT1G75210:HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase 1Chr17:40550521–40557680 (+)6.459e-11
Glyma.17G250800 hypothetical protein NA 1Chr17:40558554–40564000 (-)6.459e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.19e-11
Glyma.18G003300 hypothetical protein NA 1Chr18:276941–280909 (+)1.845e-11
Glyma.18G045700 hypothetical protein NA 1Chr18:3956176–3958846 (+)3.581e-11
Glyma.18G108400 hypothetical protein NA 1Chr18:12370997–12390275 (-)8.222e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 1Chr19:472201–476152 (-)3.131e-11
Glyma.19G102000 ICE2 AT3G26744:ICE1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:34998146–35001862 (+)5.46e-12
Glyma.19G102200 hypothetical protein AT2G31410:AT2G31410:coiled-coil protein 1Chr19:35024582–35025690 (+)5.46e-12
Glyma.19G106200 hypothetical protein AT5G13890:AT5G13890:plant viral-response family protein (DUF716) 1Chr19:35710867–35712227 (+)2.409e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.211e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.524e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)2.48e-11