Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40969

Metabolite ID
P40969
Deionized mass
144.0918 Da
Average m/z
145.1001
Average RT
20.4727
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
121
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

121 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.856e-15
Glyma.06G098300 hypothetical protein AT5G49680:AT5G49680:SABRE-like protein__AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 2Chr06:7796762–7832753 (-)1.527e-11
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)8.916e-11
Glyma.06G305300 hypothetical protein NA 2Chr06:49431590–49435985 (-)1.856e-15
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)9.524e-13
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 2Chr10:40628401–40633140 (-)1.081e-12
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)8.17e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.041e-14
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.277e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.277e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)1.177e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.793e-13
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.455e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.912e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.173e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.041e-12
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)1.057e-13
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.082e-14
Glyma.05G122300 hypothetical protein AT3G60360:EDA14:embryo sac development arrest 14 1Chr05:31585853–31588967 (-)4.26e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.572e-17
Glyma.05G125800 hypothetical protein AT2G34790:MEE23:FAD-binding Berberine family protein 1Chr05:31926976–31929133 (+)1.365e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)6.741e-16
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.054e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.368e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.368e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.47e-14
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.061e-14
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.061e-14
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.061e-14
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)1.371e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)3.364e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)4.197e-14
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.49e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)8.913e-12
Glyma.06G097800 hypothetical protein AT1G58230:AT1G58230:binding protein 1Chr06:7725465–7766431 (+)1.527e-11
Glyma.06G098200 hypothetical protein NA 1Chr06:7790290–7791746 (+)1.527e-11
Glyma.06G098700 hypothetical protein NA 1Chr06:7851216–7866791 (-)1.527e-11
Glyma.06G098800 hypothetical protein AT1G29060:AT1G29060:Target SNARE coiled-coil domain protein 1Chr06:7869693–7873331 (+)1.527e-11
Glyma.06G098900 hypothetical protein AT1G12680:PEPKR2:phosphoenolpyruvate carboxylase-related kinase 2 1Chr06:7874852–7879537 (-)1.527e-11
Glyma.06G184100 hypothetical protein NA 1Chr06:15897746–15902462 (+)4.603e-11
Glyma.06G305100 hypothetical protein NA 1Chr06:49413291–49417661 (-)9.752e-11
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.786e-13
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.856e-15
Glyma.06G320000 hypothetical protein AT1G05740:AT1G05740:FAM136A-like protein (DUF842) 1Chr06:50870241–50873816 (+)1.276e-11
Glyma.06G320100 hypothetical protein AT5G56290:PEX5:peroxin 5 1Chr06:50874167–50888925 (-)1.276e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)6.46e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)6.46e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.05e-13
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)1.371e-13
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)1.848e-11
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)1.848e-11
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)1.848e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)3.436e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.25e-12
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)1.393e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)5.219e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.185e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)4.412e-15
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.065e-14
Glyma.09G231500 hypothetical protein NA 1Chr09:45478768–45483760 (+)5.379e-11
Glyma.09G233700 hypothetical protein AT1G33430:AT1G33430:Galactosyltransferase family protein 1Chr09:45632775–45635630 (-)1.037e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)5.155e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)2.155e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)4.851e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)4.102e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)7.843e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.266e-11
Glyma.10G238200 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr10:46680865–46684088 (+)1.34e-12
Glyma.10G238300 hypothetical protein AT5G07240:IQD24:IQ-domain 24 1Chr10:46688122–46693051 (-)3.963e-11
Glyma.10G238700 hypothetical protein NA 1Chr10:46721439–46725173 (+)3.963e-11
Glyma.10G239000 hypothetical protein NA 1Chr10:46755702–46757579 (-)3.963e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.145e-14
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.542e-15
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.244e-14
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.244e-14
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.244e-14
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.244e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.312e-16
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.314e-16
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)9.988e-16
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)9.988e-16
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.389e-12
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.734e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.428e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.428e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.073e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)4.722e-12
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.041e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)8.714e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)1.896e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.755e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.714e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.364e-14
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)9.831e-11
Glyma.15G109500 hypothetical protein AT4G22030:AT4G22030:F-box protein with a domain protein 1Chr15:8591856–8593774 (-)5.337e-11
Glyma.15G110200 hypothetical protein NA 1Chr15:8634006–8639001 (-)4.917e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.113e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.664e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.113e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.113e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.902e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.337e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)7.273e-12
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)6.243e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)5.45e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)1.333e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.487e-13
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)5.364e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.587e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.587e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)7.388e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)4.281e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)5.289e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)1.078e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)8.139e-14
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)2.078e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.078e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.87e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.87e-15
Glyma.19G127700 hypothetical protein AT5G12250:TUB6:beta-6 tubulin 1Chr19:38632803–38635633 (+)9.737e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.636e-13