Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40950

Metabolite ID
P40950
Deionized mass
535.3210 Da
Average m/z
536.3289
Average RT
20.4564
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
58
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

58 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)4.228e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.781e-11
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 2Chr20:34151918–34155417 (+)7.411e-16
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)3.519e-14
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)9.262e-12
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.004e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.663e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)6.466e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.188e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.501e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.059e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.025e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.025e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.334e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.403e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.403e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.403e-12
Glyma.05G221800 hypothetical protein NA 1Chr05:40120284–40122468 (-)3.07e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.538e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.727e-14
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)9.708e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.973e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)7.798e-13
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)7.798e-13
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)7.798e-13
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)5.37e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.781e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.781e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.781e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.781e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.554e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)6.856e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)9.296e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.662e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.924e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.555e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)9.748e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)2.393e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.367e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.367e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.334e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.334e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.335e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)9.522e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.971e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)8.023e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.579e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)4.087e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.887e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.738e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.738e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)5.297e-12
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)1.766e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.305e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.851e-12
Glyma.20G098500 hypothetical protein AT2G39470:PnsL1:PsbP-like protein 2 1Chr20:34179794–34183432 (-)2.128e-12
Glyma.20G106400 hypothetical protein AT5G23590:AT5G23590:DNAJ heat shock N-terminal domain-containing protein 1Chr20:34888699–34893605 (-)1.475e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)6.782e-11