Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40778

Metabolite ID
P40778
Deionized mass
536.2443 Da
Average m/z
537.2548
Average RT
20.3463
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
54
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

54 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 3Chr07:9523110–9526319 (+)5.824e-15
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 2Chr08:8768854–8772973 (-)8.411e-12
Glyma.14G208500 hypothetical protein NA 2Chr14:47412802–47421148 (-)1.746e-12
Glyma.14G208900 hypothetical protein AT1G17200:AT1G17200:Uncharacterized protein family (UPF0497) 2Chr14:47451105–47454596 (-)5.615e-13
Glyma.14G209000 hypothetical protein NA 2Chr14:47461788–47463395 (+)5.615e-13
Glyma.14G210600 hypothetical protein AT5G17300:RVE1:Homeodomain-like superfamily protein 2Chr14:47557927–47561596 (-)2.102e-11
Glyma.14G211000 IDH1 AT1G65930:cICDH:cytosolic NADP+-dependent isocitrate dehydrogenase 2Chr14:47592207–47597473 (+)1.949e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)3.017e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)5.484e-11
Glyma.01G017900 hypothetical protein NA 1Chr01:1734474–1735545 (+)6.044e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)1.907e-11
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 1Chr03:44064511–44073939 (+)7.678e-11
Glyma.05G149900 hypothetical protein NA 1Chr05:34389242–34393621 (-)7.163e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.435e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.256e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.653e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.617e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.856e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.629e-12
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)6.931e-12
Glyma.08G109400 CHS1 AT5G13930:TT4:Chalcone and stilbene synthase family protein 1Chr08:8391364–8394840 (+)3.856e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)6.931e-12
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)2.001e-11
Glyma.08G115700 hypothetical protein AT1G29120:AT1G29120:Hydrolase-like protein family 1Chr08:8868075–8876513 (+)6.798e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.983e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.983e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)4.983e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)4.983e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.596e-13
Glyma.14G208400 hypothetical protein AT5G16360:AT5G16360:NC domain-containing protein-like protein 1Chr14:47403978–47407155 (-)4.402e-12
Glyma.14G208600 hypothetical protein NA 1Chr14:47437358–47439597 (-)5.615e-13
Glyma.14G208700 hypothetical protein NA 1Chr14:47442866–47447625 (-)5.615e-13
Glyma.14G209100 hypothetical protein NA 1Chr14:47464224–47465243 (+)7.525e-13
Glyma.14G209200 hypothetical protein NA 1Chr14:47466917–47468975 (+)5.615e-13
Glyma.14G209600 hypothetical protein NA 1Chr14:47485565–47488948 (-)5.615e-13
Glyma.14G209800 hypothetical protein AT5G17240:SDG40:SET domain group 40 1Chr14:47508042–47511868 (+)7.525e-13
Glyma.14G209900 hypothetical protein NA 1Chr14:47515899–47521687 (+)7.525e-13
Glyma.14G210700 hypothetical protein NA 1Chr14:47577189–47584929 (+)7.222e-11
Glyma.14G211100 hypothetical protein AT1G65960:GAD2:glutamate decarboxylase 2 1Chr14:47603425–47609079 (+)1.949e-12
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)9.515e-12
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)7.953e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)4.276e-12
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)4.276e-12
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)4.276e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)4.889e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)2.019e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)6.699e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.788e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.686e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)6.686e-11
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)6.872e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)9.38e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.905e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.652e-11