P40689
Metabolite ID
P40689
Deionized mass
496.1223 Da
Average m/z
497.1309
Average RT
20.3111
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
86
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
86 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.20G099500 | hypothetical protein | AT3G12590:AT3G12590:uncharacterized protein | 4 | Chr20:34275736–34292214 (-) | 2.442e-12 | |
| Glyma.09G053800 | hypothetical protein | NA | 3 | Chr09:4737413–4755632 (-) | 6.024e-12 | |
| Glyma.04G098100 | hypothetical protein | AT2G34990:AT2G34990:RING/U-box superfamily protein__AT1G72200:AT1G72200:RING/U-box superfamily protein | 2 | Chr04:8887523–8888545 (-) | 9.896e-12 | |
| Glyma.04G098300 | hypothetical protein | NA | 2 | Chr04:8910522–8912389 (-) | 9.896e-12 | |
| Glyma.05G131200 | hypothetical protein | AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein | 2 | Chr05:32421116–32425198 (-) | 1.11e-14 | |
| Glyma.06G130300 | hypothetical protein | AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein | 2 | Chr06:10709045–10716245 (-) | 1.113e-12 | |
| Glyma.06G183500 | hypothetical protein | AT5G50000:AT5G50000:Protein kinase superfamily protein | 2 | Chr06:15828917–15834067 (+) | 3.634e-12 | |
| Glyma.20G053000 | hypothetical protein | NA | 2 | Chr20:11983566–11990328 (-) | 5.112e-13 | |
| Glyma.20G053700 | hypothetical protein | NA | 2 | Chr20:12341598–12348808 (+) | 5.112e-13 | |
| Glyma.20G098400 | hypothetical protein | AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b | 2 | Chr20:34151918–34155417 (+) | 7.909e-12 | |
| Glyma.20G098700 | hypothetical protein | AT2G39490:AT2G39490:F-box family protein | 2 | Chr20:34192396–34194345 (+) | 2.499e-13 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 1 | Chr03:2423540–2428634 (-) | 6.216e-13 | |
| Glyma.04G086600 | hypothetical protein | NA | 1 | Chr04:7374806–7380808 (+) | 3.255e-11 | |
| Glyma.04G097900 | hypothetical protein | AT5G65380:AT5G65380:MATE efflux family protein | 1 | Chr04:8857667–8865249 (+) | 7.64e-12 | |
| Glyma.04G098400 | hypothetical protein | AT1G22490:AT1G22490:basic helix-loop-helix (bHLH) DNA-binding superfamily protein__AT1G72210:AT1G72210:basic helix-loop… | 1 | Chr04:8914410–8916406 (+) | 2.401e-11 | |
| Glyma.04G104400 | hypothetical protein | NA | 1 | Chr04:9885009–9889282 (+) | 9.3e-12 | |
| Glyma.04G112200 | hypothetical protein | AT5G51750:SBT1.3:subtilase 1.3 | 1 | Chr04:12562882–12565006 (+) | 6.989e-11 | |
| Glyma.04G190200 | hypothetical protein | AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 | 1 | Chr04:46086785–46089618 (-) | 3.224e-11 | |
| Glyma.05G123300 | hypothetical protein | NA | 1 | Chr05:31696132–31700404 (+) | 1.977e-12 | |
| Glyma.05G124200 | hypothetical protein | AT4G20790:AT4G20790:Leucine-rich repeat protein kinase family protein | 1 | Chr05:31776906–31778608 (-) | 1.137e-11 | |
| Glyma.05G124700 | hypothetical protein | NA | 1 | Chr05:31807311–31817648 (+) | 7.141e-19 | |
| Glyma.05G125800 | hypothetical protein | AT2G34790:MEE23:FAD-binding Berberine family protein | 1 | Chr05:31926976–31929133 (+) | 3.642e-14 | |
| Glyma.05G126400 | hypothetical protein | NA | 1 | Chr05:31961493–31968339 (+) | 5.525e-11 | |
| Glyma.05G127200 | hypothetical protein | AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | 1 | Chr05:32014213–32017922 (-) | 2.743e-15 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 7.33e-15 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 7.33e-15 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 4.292e-18 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 3.715e-18 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 3.715e-18 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 3.715e-18 | |
| Glyma.05G164700 | hypothetical protein | NA | 1 | Chr05:35543931–35549196 (-) | 6.371e-12 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 4.696e-12 | |
| Glyma.06G084800 | hypothetical protein | NA | 1 | Chr06:6515571–6517480 (-) | 5.224e-12 | |
| Glyma.06G085000 | hypothetical protein | NA | 1 | Chr06:6524339–6529016 (-) | 5.224e-12 | |
| Glyma.06G085100 | hypothetical protein | NA | 1 | Chr06:6531956–6537295 (-) | 5.224e-12 | |
| Glyma.06G085200 | hypothetical protein | NA | 1 | Chr06:6540849–6545557 (+) | 9.067e-12 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 6.831e-11 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 6.831e-11 | |
| Glyma.06G129400 | hypothetical protein | AT5G24300:SS1:Glycogen/starch synthases, ADP-glucose type | 1 | Chr06:10632042–10640023 (+) | 4.162e-11 | |
| Glyma.06G129800 | hypothetical protein | AT5G53030:AT5G53030:uncharacterized protein | 1 | Chr06:10667029–10669377 (+) | 3.433e-13 | |
| Glyma.06G130100 | hypothetical protein | AT3G49290:ABIL2:ABL interactor-like protein 2 | 1 | Chr06:10695256–10699675 (+) | 3.433e-13 | |
| Glyma.06G130700 | hypothetical protein | AT5G53060:RCF3:RNA-binding KH domain-containing protein | 1 | Chr06:10742110–10747597 (-) | 1.86e-14 | |
| Glyma.07G021800 | hypothetical protein | AT1G80920:J8:Chaperone DnaJ-domain superfamily protein | 1 | Chr07:1697119–1698666 (+) | 6.989e-11 | |
| Glyma.08G016700 | hypothetical protein | AT1G63840:AT1G63840:RING/U-box superfamily protein | 1 | Chr08:1330226–1331366 (-) | 4.344e-11 | |
| Glyma.09G052900 | hypothetical protein | NA | 1 | Chr09:4652312–4653046 (+) | 6.412e-11 | |
| Glyma.09G054100 | hypothetical protein | NA | 1 | Chr09:4780506–4788669 (-) | 6.412e-11 | |
| Glyma.09G059600 | hypothetical protein | AT4G30010:AT4G30010:ATP-dependent RNA helicase | 1 | Chr09:5504630–5507434 (+) | 6.466e-11 | |
| Glyma.09G059700 | hypothetical protein | AT4G29940:PRHA:pathosis related homeodomain protein A | 1 | Chr09:5513108–5520158 (+) | 6.466e-11 | |
| Glyma.09G060200 | hypothetical protein | AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr09:5571201–5579976 (-) | 6.466e-11 | |
| Glyma.09G080200 | hypothetical protein | NA | 1 | Chr09:9256042–9263239 (-) | 9.432e-11 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 2.383e-14 | |
| Glyma.09G084300 | hypothetical protein | AT2G34680:AIR9:Outer arm dynein light chain 1 protein | 1 | Chr09:10129602–10197250 (-) | 3.356e-13 | |
| Glyma.13G156000 | hypothetical protein | AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 | 1 | Chr13:27104338–27109785 (+) | 7.772e-12 | |
| Glyma.13G203900 | hypothetical protein | NA | 1 | Chr13:31793697–31796601 (-) | 3.067e-11 | |
| Glyma.14G069500 | hypothetical protein | AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 | 1 | Chr14:5822246–5825628 (-) | 7.811e-12 | |
| Glyma.16G189100 | hypothetical protein | AT1G05190:emb2394:Ribosomal protein L6 family | 1 | Chr16:35170253–35173950 (-) | 6.774e-12 | |
| Glyma.18G251900 | hypothetical protein | AT3G60320:AT3G60320:bZIP domain class transcription factor (DUF630 and DUF632)__AT1G02110:AT1G02110:bZIP domain class t… | 1 | Chr18:53855786–53862322 (-) | 2.834e-13 | |
| Glyma.18G298600 | hypothetical protein | AT1G44960:AT1G44960:SNARE associated Golgi protein family | 1 | Chr18:57614292–57617223 (+) | 6.344e-11 | |
| Glyma.18G299100 | hypothetical protein | AT5G13420:TRA2:Aldolase-type TIM barrel family protein | 1 | Chr18:57674222–57678396 (+) | 7.594e-12 | |
| Glyma.18G301600 | hypothetical protein | AT2G33490:AT2G33490:hydroxyproline-rich glycoprotein family protein | 1 | Chr18:57939468–57945328 (+) | 2.34e-12 | |
| Glyma.18G301900 | hypothetical protein | AT5G13190:GILP:GSH-induced LITAF domain protein | 1 | Chr18:57953323–57956369 (-) | 2.677e-13 | |
| Glyma.19G012100 | hypothetical protein | AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 | 1 | Chr19:1155711–1161298 (-) | 5.551e-11 | |
| Glyma.19G012300 | hypothetical protein | NA | 1 | Chr19:1165111–1173031 (-) | 5.551e-11 | |
| Glyma.19G218100 | hypothetical protein | AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 | 1 | Chr19:47082133–47085750 (+) | 5.667e-11 | |
| Glyma.20G013100 | hypothetical protein | NA | 1 | Chr20:1134080–1135710 (-) | 1.725e-14 | |
| Glyma.20G051800 | hypothetical protein | NA | 1 | Chr20:11725161–11725963 (+) | 3.161e-12 | |
| Glyma.20G051900 | hypothetical protein | AT5G21105:AT5G21105:Plant L-ascorbate oxidase | 1 | Chr20:11769051–11777145 (-) | 3.161e-12 | |
| Glyma.20G053100 | Early nodulin-like protein 20 | AT2G27035:ENODL20:early nodulin-like protein 20 | 1 | Chr20:12015196–12015822 (-) | 4.388e-12 | |
| Glyma.20G053200 | hypothetical protein | AT5G21060:AT5G21060:Glyceraldehyde-3-phosphate dehydrogenase-like family protein | 1 | Chr20:12030619–12040081 (-) | 4.388e-12 | |
| Glyma.20G053500 | hypothetical protein | AT2G27110:FRS3:FAR1-related sequence 3 | 1 | Chr20:12277793–12295586 (+) | 4.388e-12 | |
| Glyma.20G054000 | hypothetical protein | NA | 1 | Chr20:12411805–12423973 (-) | 4.388e-12 | |
| Glyma.20G055400 | hypothetical protein | NA | 1 | Chr20:13199672–13205467 (+) | 5.112e-13 | |
| Glyma.20G056500 | hypothetical protein | AT1G35220:AT1G35220:FAM91 carboxy-terminus protein | 1 | Chr20:14773334–14777681 (-) | 5.112e-13 | |
| Glyma.20G056800 | hypothetical protein | AT2G32970:AT2G32970:G1/S-specific cyclin-E protein | 1 | Chr20:15720600–15729831 (-) | 5.112e-13 | |
| Glyma.20G057300 | hypothetical protein | NA | 1 | Chr20:16424783–16426060 (-) | 5.112e-13 | |
| Glyma.20G057400 | hypothetical protein | NA | 1 | Chr20:16684534–16688382 (+) | 4.388e-12 | |
| Glyma.20G057500 | hypothetical protein | NA | 1 | Chr20:16724289–16728840 (+) | 5.112e-13 | |
| Glyma.20G058000 | hypothetical protein | AT1G76490:HMG1:hydroxy methylglutaryl CoA reductase 1 | 1 | Chr20:17037758–17043212 (-) | 5.112e-13 | |
| Glyma.20G059300 | hypothetical protein | NA | 1 | Chr20:17987356–17987736 (-) | 5.112e-13 | |
| Glyma.20G059500 | hypothetical protein | NA | 1 | Chr20:18063874–18068733 (-) | 3.161e-12 | |
| Glyma.20G098100 | hypothetical protein | AT1G56420:AT1G56420:antigenic heat-stable protein | 1 | Chr20:34134555–34139100 (-) | 3.677e-13 | |
| Glyma.20G098200 | hypothetical protein | AT1G56345:AT1G56345:Pseudouridine synthase family protein | 1 | Chr20:34140611–34141832 (+) | 2.4e-15 | |
| Glyma.20G098600 | hypothetical protein | AT4G01470:TIP1;3:tonoplast intrinsic protein 1;3 | 1 | Chr20:34184591–34191923 (+) | 3.161e-12 | |
| Glyma.20G099200 | hypothetical protein | AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… | 1 | Chr20:34242852–34248956 (-) | 3.181e-13 | |
| Glyma.20G099600 | hypothetical protein | AT3G55400:OVA1:methionyl-tRNA synthetase / methionine-tRNA ligase / MetRS (cpMetRS) | 1 | Chr20:34295547–34302938 (+) | 2.442e-12 | |
| Glyma.20G101700 | hypothetical protein | AT5G08580:AT5G08580:Calcium-binding EF hand family protein | 1 | Chr20:34467936–34475476 (-) | 2.138e-11 |