Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40632

Metabolite ID
P40632
Deionized mass
519.7079 Da
Average m/z
520.7154
Average RT
20.2842
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G029800 hypothetical protein NA 5Chr19:3724518–3729860 (-)5.312e-14
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)2.22e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.564e-11
Glyma.19G029600 hypothetical protein NA 4Chr19:3681517–3690884 (-)3.207e-16
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.209e-12
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)2.106e-14
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)2.39e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)2.106e-14
Glyma.08G122500 hypothetical protein NA 2Chr08:9441329–9445315 (-)2.106e-14
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.453e-15
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)7.565e-12
Glyma.16G172500 hypothetical protein AT3G59140:ABCC10:multidrug resistance-associated protein 14 2Chr16:33322352–33330062 (+)9.36e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.564e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.144e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)3.737e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)1.041e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)4.125e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)7.705e-11
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)1.408e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)7.703e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)5.911e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.296e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)5.468e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)3.281e-11
Glyma.06G303700 hypothetical protein AT1G05230:HDG2:homeodomain GLABROUS 2 1Chr06:49315918–49324382 (+)2.263e-11
Glyma.06G303800 hypothetical protein AT1G05220:AT1G05220:Transmembrane protein 97, Putative__AT2G32380:AT2G32380:Transmembrane protein 97, Putative 1Chr06:49328417–49330906 (-)2.263e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.209e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.209e-12
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.805e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.505e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.106e-14
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)8.732e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.106e-14
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.3e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)3.289e-21
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)3.289e-21
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.655e-15
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.456e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.878e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)7.265e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)8.221e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)8.221e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)8.221e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)8.221e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.969e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)2.195e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.522e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)7.355e-12
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)4.34e-11
Glyma.16G115800 hypothetical protein NA 1Chr16:25719040–25728740 (-)5.513e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)8.393e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)4.912e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)5.416e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.39e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.14e-13
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.14e-13
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)2.948e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.936e-14
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.936e-14
Glyma.19G029500 hypothetical protein NA 1Chr19:3669589–3673886 (-)1.861e-11
Glyma.19G029900 hypothetical protein NA 1Chr19:3729213–3729434 (+)1.861e-11
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)3.394e-11
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)3.394e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)6.914e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)5.14e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.465e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)7.651e-13