Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40508

Metabolite ID
P40508
Deionized mass
257.2406 Da
Average m/z
258.2467
Average RT
20.2135
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
40
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

40 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.25e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)1.238e-11
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)9.968e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)5.664e-12
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.231e-12
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)5.407e-12
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.006e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)8.532e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)2.228e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.192e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.92e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.374e-15
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.511e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)1.402e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.471e-11
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)9.654e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)8.202e-11
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)6.202e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)2.865e-11
Glyma.11G110300 hypothetical protein AT2G16530:AT2G16530:3-oxo-5-alpha-steroid 4-dehydrogenase family protein__AT1G72590:AT1G72590:3-oxo-5-alpha-steroid 4-d… 1Chr11:8402144–8406496 (-)5.285e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.708e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.708e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.979e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)1.061e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.639e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.083e-14
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.892e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.25e-11
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)9.869e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.878e-11
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.688e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)1.913e-14
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.665e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)1.238e-11
Glyma.17G189300 hypothetical protein NA 1Chr17:25644440–25649489 (-)5.851e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)2.885e-14
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)9.969e-12
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)3.367e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)2.38e-11
Glyma.19G129500 hypothetical protein AT2G41160:AT2G41160:Ubiquitin-associated (UBA) protein 1Chr19:38884116–38901744 (-)9.54e-12