Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40493

Metabolite ID
P40493
Deionized mass
370.1386 Da
Average m/z
371.1458
Average RT
20.2031
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)7.685e-13
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 2Chr08:9054060–9063297 (+)1.62e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)4.696e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.136e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)1.699e-11
Glyma.16G137600 hypothetical protein NA 2Chr16:29468438–29472890 (-)3.391e-14
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)9.664e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.852e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.749e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)9.291e-14
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.549e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.549e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.549e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.549e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.549e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.549e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.549e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)7.685e-13
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)2.048e-11
Glyma.01G146100 hypothetical protein AT4G28880:ckl3:casein kinase I-like 3 1Chr01:48126933–48134480 (+)5.425e-13
Glyma.01G146600 hypothetical protein AT2G20050:AT2G20050:protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 1Chr01:48181319–48189905 (-)5.425e-13
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)8.256e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.207e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.608e-19
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.614e-15
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)5.693e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)4.696e-13
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)9.656e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)5.473e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.946e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)4.833e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.059e-12
Glyma.14G119800 hypothetical protein AT1G43850:SEU:SEUSS transcriptional co-regulator 1Chr14:16751592–16763348 (-)1.934e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)1.699e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)1.456e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)1.765e-11
Glyma.16G051100 hypothetical protein NA 1Chr16:4896279–4898219 (-)8.338e-12
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)5.554e-11
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)1.202e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)8.901e-17
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)2.885e-13
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)2.067e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.978e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)4.047e-11
Glyma.18G260000 hypothetical protein AT4G21680:NRT1.8:NITRATE TRANSPORTER 1.8 1Chr18:54610000–54615674 (+)7.839e-11
Glyma.18G265900 hypothetical protein NA 1Chr18:55040041–55042737 (-)6.677e-12
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)1.096e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)5.751e-11