Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P40125

Metabolite ID
P40125
Deionized mass
845.4871 Da
Average m/z
846.4939
Average RT
19.9505
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
76
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

76 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)6.83e-13
Glyma.17G217900 hypothetical protein NA 3Chr17:36771760–36778616 (-)2.044e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 2Chr03:1875182–1876855 (+)8.933e-12
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.144e-13
Glyma.07G068800 hypothetical protein NA 2Chr07:6211775–6221107 (-)7.732e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 2Chr14:1009519–1014238 (+)6.296e-12
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)3.526e-12
Glyma.16G111100 hypothetical protein NA 2Chr16:24438458–24444801 (+)6.775e-13
Glyma.16G111800 hypothetical protein AT2G17520:IRE1A:Endoribonuclease/protein kinase IRE1-like protein 2Chr16:24720965–24731678 (-)4.684e-13
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.905e-14
Glyma.18G106600 hypothetical protein NA 2Chr18:11947553–11951868 (+)3.436e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)3.172e-11
Glyma.01G021700 hypothetical protein NA 1Chr01:2197811–2200232 (+)1.551e-11
Glyma.01G022000 hypothetical protein NA 1Chr01:2209688–2210849 (-)1.551e-11
Glyma.01G022200 hypothetical protein NA 1Chr01:2212834–2213622 (+)1.551e-11
Glyma.03G007100 hypothetical protein AT5G17780:AT5G17780:alpha/beta-Hydrolases superfamily protein__AT5G17720:AT5G17720:alpha/beta-Hydrolases superfamily pr… 1Chr03:647777–651152 (-)6.976e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.029e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.181e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.775e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.599e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.778e-15
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)1.772e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)9.941e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)9.941e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)8.754e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.017e-11
Glyma.06G136200 hypothetical protein AT5G54170:AT5G54170:Polyketide cyclase/dehydrase and lipid transport superfamily protein 1Chr06:11160066–11162505 (-)2.839e-11
Glyma.06G276300 hypothetical protein NA 1Chr06:46741410–46744086 (-)5.307e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)7.878e-11
Glyma.07G068300 hypothetical protein AT5G62980:FOLB2:Dihydroneopterin aldolase__AT3G11750:FOLB1:Dihydroneopterin aldolase 1Chr07:6169729–6172231 (+)2.904e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)1.931e-12
Glyma.07G079800 hypothetical protein NA 1Chr07:7259786–7263265 (+)9.674e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.32e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 1Chr07:9523110–9526319 (+)5.967e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.679e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.477e-12
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)4.31e-11
Glyma.09G237900 hypothetical protein NA 1Chr09:45960580–45964267 (+)1.307e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.185e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)1.08e-16
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.179e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.179e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.179e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.179e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)6.682e-12
Glyma.11G236800 hypothetical protein AT5G09360:LAC14:laccase 14 1Chr11:33157016–33161441 (+)3.706e-11
Glyma.11G237100 hypothetical protein NA 1Chr11:33172417–33173178 (+)3.706e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)1.11e-12
Glyma.11G238100 hypothetical protein AT4G39820:AT4G39820:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr11:33261569–33264662 (+)1.284e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.126e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.126e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)8.131e-13
Glyma.12G236500 hypothetical protein NA 1Chr12:39528803–39534614 (-)8.25e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)8.079e-12
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.211e-13
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)7.786e-15
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.168e-15
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)3.952e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)9.061e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)9.061e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)9.061e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.209e-12
Glyma.16G050000 hypothetical protein AT5G14040:PHT3;1:phosphate transporter 3;1 1Chr16:4788380–4801207 (+)6.046e-11
Glyma.16G105700 hypothetical protein NA 1Chr16:21404554–21412265 (-)1.826e-13
Glyma.16G105800 hypothetical protein NA 1Chr16:21409016–21412087 (-)1.826e-13
Glyma.16G106200 hypothetical protein NA 1Chr16:21463300–21469532 (+)1.826e-13
Glyma.16G111200 hypothetical protein AT5G65930:ZWI:kinesin-like calmodulin-binding protein (ZWICHEL) 1Chr16:24455709–24466236 (+)6.775e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)4.229e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.6e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)1.761e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)8.164e-12
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.345e-11
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)6.411e-11
Glyma.18G106700 hypothetical protein NA 1Chr18:11956201–11957138 (-)4.393e-11
Glyma.18G106800 hypothetical protein AT2G42880:MPK20:MAP kinase 20 1Chr18:11959920–11966545 (-)4.393e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.404e-11