P39803
Metabolite ID
P39803
Deionized mass
300.1905 Da
Average m/z
301.1987
Average RT
19.7543
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
103
GWAS result file
Available
Candidate annotations
Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations
GWAS Evidence
Dataset: indexed GWAS records.
SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.
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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage
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Associated genes
103 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.
| Gene ID | Alias | Description | Arabidopsis ortholog | Supporting SNP records | Gene interval (1-based) | Minimum P |
|---|---|---|---|---|---|---|
| Glyma.20G105300 | hypothetical protein | AT4G38470:STY46:ACT-like protein tyrosine kinase family protein | 6 | Chr20:34757381–34771672 (+) | 1.788e-11 | |
| Glyma.03G023000 | hypothetical protein | AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein | 3 | Chr03:2423540–2428634 (-) | 4.553e-14 | |
| Glyma.03G040600 | hypothetical protein | AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 | 2 | Chr03:5113019–5121557 (+) | 1.368e-13 | |
| Glyma.03G120100 | hypothetical protein | AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 | 2 | Chr03:33174618–33180955 (+) | 5.14e-12 | |
| Glyma.04G084800 | hypothetical protein | AT5G11630:NOXY2:uncharacterized protein | 2 | Chr04:7187985–7192897 (+) | 6.477e-12 | |
| Glyma.08G123500 | hypothetical protein | NA | 2 | Chr08:9494946–9505931 (-) | 5.665e-11 | |
| Glyma.16G159100 | hypothetical protein | NA | 2 | Chr16:31889835–31894662 (+) | 2.075e-13 | |
| Glyma.16G178800 | hypothetical protein | NA | 2 | Chr16:33950003–33953968 (-) | 2.763e-11 | |
| Glyma.16G178900 | hypothetical protein | AT4G25720:QC:glutaminyl cyclase | 2 | Chr16:33954446–33960344 (+) | 1.817e-11 | |
| Glyma.01G021600 | hypothetical protein | AT5G65540:AT5G65540:transcription initiation factor TFIID subunit | 1 | Chr01:2189923–2194362 (-) | 3.885e-11 | |
| Glyma.01G120000 | hypothetical protein | NA | 1 | Chr01:41270985–41274854 (+) | 3.735e-12 | |
| Glyma.01G123900 | hypothetical protein | AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein | 1 | Chr01:42831758–42837350 (+) | 2.486e-12 | |
| Glyma.01G124100 | hypothetical protein | NA | 1 | Chr01:42886229–42892204 (-) | 8.117e-12 | |
| Glyma.01G124800 | hypothetical protein | AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 | 1 | Chr01:43072403–43076304 (+) | 1.879e-11 | |
| Glyma.01G125400 | hypothetical protein | NA | 1 | Chr01:43394231–43404097 (-) | 1.879e-11 | |
| Glyma.01G125500 | hypothetical protein | NA | 1 | Chr01:43398981–43401979 (+) | 1.879e-11 | |
| Glyma.01G126000 | hypothetical protein | AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein | 1 | Chr01:43477322–43480661 (-) | 1.879e-11 | |
| Glyma.01G126300 | hypothetical protein | NA | 1 | Chr01:43513210–43516682 (-) | 1.879e-11 | |
| Glyma.01G126400 | hypothetical protein | NA | 1 | Chr01:43526917–43529405 (-) | 1.879e-11 | |
| Glyma.01G126500 | hypothetical protein | NA | 1 | Chr01:43543307–43549330 (-) | 1.879e-11 | |
| Glyma.02G086900 | hypothetical protein | AT3G24130:AT3G24130:Pectin lyase-like superfamily protein | 1 | Chr02:7553127–7557516 (-) | 1.634e-12 | |
| Glyma.03G021700 | hypothetical protein | AT2G45490:AUR3:ataurora3 | 1 | Chr03:2248429–2251737 (+) | 8.991e-11 | |
| Glyma.03G022100 | hypothetical protein | AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:2301675–2307263 (+) | 1.44e-12 | |
| Glyma.03G035400 | hypothetical protein | AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein | 1 | Chr03:4282985–4285957 (-) | 3.051e-12 | |
| Glyma.03G035500 | hypothetical protein | NA | 1 | Chr03:4289118–4294184 (+) | 9.353e-12 | |
| Glyma.03G135300 | hypothetical protein | NA | 1 | Chr03:35092248–35097578 (+) | 8.489e-11 | |
| Glyma.03G136100 | hypothetical protein | NA | 1 | Chr03:35199503–35203392 (-) | 1.393e-12 | |
| Glyma.03G145700 | hypothetical protein | AT3G58030:AT3G58030:RING/U-box superfamily protein | 1 | Chr03:36109689–36112241 (+) | 4.72e-11 | |
| Glyma.03G145900 | hypothetical protein | AT5G06700:AT5G06700:trichome birefringence-like protein (DUF828) | 1 | Chr03:36127816–36131230 (-) | 2.613e-11 | |
| Glyma.03G152800 | hypothetical protein | AT4G09820:TT8:basic helix-loop-helix (bHLH) DNA-binding superfamily protein | 1 | Chr03:36782245–36790298 (+) | 8.072e-11 | |
| Glyma.03G153200 | hypothetical protein | NA | 1 | Chr03:36815745–36819041 (-) | 8.072e-11 | |
| Glyma.03G223000 | hypothetical protein | AT1G02500:SAM1:S-adenosylmethionine synthetase 1 | 1 | Chr03:42579900–42582675 (+) | 1.157e-11 | |
| Glyma.04G084200 | hypothetical protein | AT2G25830:AT2G25830:YebC-like protein | 1 | Chr04:7137351–7146570 (-) | 1.128e-11 | |
| Glyma.04G084300 | hypothetical protein | AT2G25800:AT2G25800:elongation factor Ts (DUF810) | 1 | Chr04:7153009–7158438 (+) | 8.283e-11 | |
| Glyma.05G127300 | hypothetical protein | AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B | 1 | Chr05:32021521–32025767 (-) | 4.764e-11 | |
| Glyma.05G127400 | hypothetical protein | AT1G29850:AT1G29850:double-stranded DNA-binding family protein | 1 | Chr05:32030115–32033716 (+) | 4.764e-11 | |
| Glyma.05G127500 | hypothetical protein | NA | 1 | Chr05:32041345–32049554 (+) | 5.885e-12 | |
| Glyma.05G127800 | hypothetical protein | AT4G18240:SS4:starch synthase 4 | 1 | Chr05:32125404–32138244 (+) | 1.454e-11 | |
| Glyma.05G127900 | SAD1 | AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein | 1 | Chr05:32139620–32141770 (-) | 1.454e-11 | |
| Glyma.05G128200 | hypothetical protein | AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein | 1 | Chr05:32158034–32162343 (-) | 1.454e-11 | |
| Glyma.05G130600 | hypothetical protein | AT1G30040:GA2OX2:gibberellin 2-oxidase | 1 | Chr05:32352085–32354865 (+) | 3.237e-13 | |
| Glyma.05G131200 | hypothetical protein | AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein | 1 | Chr05:32421116–32425198 (-) | 2.018e-12 | |
| Glyma.05G164700 | hypothetical protein | NA | 1 | Chr05:35543931–35549196 (-) | 7.322e-11 | |
| Glyma.05G236400 | hypothetical protein | AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 | 1 | Chr05:41274513–41279615 (-) | 2.086e-12 | |
| Glyma.05G236700 | hypothetical protein | AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein | 1 | Chr05:41301540–41310727 (+) | 1.187e-16 | |
| Glyma.05G237800 | hypothetical protein | AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 | 1 | Chr05:41406807–41413022 (-) | 3.648e-19 | |
| Glyma.06G125200 | hypothetical protein | AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 | 1 | Chr06:10209787–10215982 (+) | 7.709e-13 | |
| Glyma.06G125300 | hypothetical protein | AT5G24105:AGP41:arabinogalactan protein 41 | 1 | Chr06:10216506–10218901 (-) | 7.709e-13 | |
| Glyma.07G068200 | hypothetical protein | AT4G00310:EDA8:Putative membrane lipoprotein | 1 | Chr07:6146155–6148036 (-) | 5.933e-11 | |
| Glyma.07G129600 | hypothetical protein | AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 | 1 | Chr07:15404178–15410144 (-) | 1.095e-11 | |
| Glyma.08G122200 | hypothetical protein | NA | 1 | Chr08:9416766–9429995 (-) | 5.665e-11 | |
| Glyma.08G122300 | hypothetical protein | AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 | 1 | Chr08:9435391–9437279 (+) | 5.665e-11 | |
| Glyma.08G122500 | hypothetical protein | NA | 1 | Chr08:9441329–9445315 (-) | 5.665e-11 | |
| Glyma.08G122700 | hypothetical protein | AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) | 1 | Chr08:9452604–9458932 (+) | 5.665e-11 | |
| Glyma.08G202000 | hypothetical protein | AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein | 1 | Chr08:16375907–16384294 (-) | 1.854e-14 | |
| Glyma.08G210200 | hypothetical protein | NA | 1 | Chr08:17010526–17012557 (+) | 2.809e-13 | |
| Glyma.08G210300 | hypothetical protein | NA | 1 | Chr08:17011623–17012548 (-) | 2.809e-13 | |
| Glyma.08G211800 | hypothetical protein | NA | 1 | Chr08:17104514–17105442 (-) | 1.738e-15 | |
| Glyma.09G082000 | hypothetical protein | NA | 1 | Chr09:9638564–9650178 (+) | 4.969e-11 | |
| Glyma.10G078700 | hypothetical protein | NA | 1 | Chr10:8882318–8903950 (+) | 2.489e-12 | |
| Glyma.10G079100 | hypothetical protein | NA | 1 | Chr10:8960669–8962364 (-) | 2.489e-12 | |
| Glyma.10G079800 | hypothetical protein | NA | 1 | Chr10:9223520–9228511 (-) | 2.489e-12 | |
| Glyma.10G080000 | hypothetical protein | AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… | 1 | Chr10:9258476–9260697 (-) | 2.489e-12 | |
| Glyma.10G265400 | hypothetical protein | AT2G01290:RPI2: | 1 | Chr10:48921268–48922795 (+) | 1.13e-11 | |
| Glyma.11G064300 | hypothetical protein | AT4G36780:BEH2:BES1/BZR1 homolog 2 | 1 | Chr11:4849799–4851673 (+) | 5.974e-14 | |
| Glyma.11G165900 | hypothetical protein | AT5G58510:AT5G58510:Rab3 GTPase-activating protein catalytic protein | 1 | Chr11:15890687–15912099 (-) | 8.943e-12 | |
| Glyma.11G166100 | hypothetical protein | AT2G30110:UBA1:ubiquitin-activating enzyme 1 | 1 | Chr11:15941545–15948932 (+) | 8.943e-12 | |
| Glyma.11G166200 | hypothetical protein | NA | 1 | Chr11:15951003–15963149 (-) | 8.943e-12 | |
| Glyma.11G167100 | hypothetical protein | NA | 1 | Chr11:16310396–16317417 (+) | 8.943e-12 | |
| Glyma.11G167400 | hypothetical protein | NA | 1 | Chr11:16491689–16494364 (-) | 8.943e-12 | |
| Glyma.11G167800 | hypothetical protein | NA | 1 | Chr11:16649420–16666371 (+) | 8.943e-12 | |
| Glyma.11G169500 | hypothetical protein | NA | 1 | Chr11:18001828–18002310 (+) | 8.943e-12 | |
| Glyma.11G169700 | hypothetical protein | AT1G07110:F2KP:fructose-2,6-bisphosphatase | 1 | Chr11:18034188–18046104 (-) | 8.943e-12 | |
| Glyma.11G170100 | hypothetical protein | NA | 1 | Chr11:18127748–18139401 (-) | 8.943e-12 | |
| Glyma.11G170300 | hypothetical protein | AT3G47340:ASN1:glutamine-dependent asparagine synthase 1 | 1 | Chr11:18242402–18247271 (+) | 8.943e-12 | |
| Glyma.11G170700 | hypothetical protein | AT5G23880:CPSF100:cleavage and polyadenylation specificity factor 100 | 1 | Chr11:18313678–18328202 (-) | 8.943e-12 | |
| Glyma.11G170800 | hypothetical protein | NA | 1 | Chr11:18343004–18346283 (+) | 8.943e-12 | |
| Glyma.11G170900 | hypothetical protein | AT5G58610:AT5G58610:PHD finger transcription factor | 1 | Chr11:18345392–18359356 (-) | 8.943e-12 | |
| Glyma.12G059300 | hypothetical protein | NA | 1 | Chr12:4289989–4292215 (-) | 3.307e-11 | |
| Glyma.15G256300 | hypothetical protein | NA | 1 | Chr15:48546007–48547401 (-) | 8.888e-13 | |
| Glyma.16G028100 | hypothetical protein | AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein | 1 | Chr16:2725294–2733429 (-) | 6.487e-12 | |
| Glyma.16G057600 | hypothetical protein | AT3G27170:CLC-B:chloride channel B | 1 | Chr16:5650591–5655830 (+) | 2.159e-12 | |
| Glyma.16G139500 | hypothetical protein | AT5G66550:AT5G66550:Maf-like protein | 1 | Chr16:29686243–29690410 (-) | 7.34e-11 | |
| Glyma.16G140600 | hypothetical protein | NA | 1 | Chr16:29836830–29839178 (+) | 3.065e-11 | |
| Glyma.16G157200 | hypothetical protein | AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein | 1 | Chr16:31774664–31777363 (+) | 6.219e-11 | |
| Glyma.16G161000 | hypothetical protein | NA | 1 | Chr16:32027849–32031609 (-) | 1.192e-12 | |
| Glyma.16G161500 | hypothetical protein | NA | 1 | Chr16:32076715–32092322 (-) | 9.996e-11 | |
| Glyma.16G178700 | hypothetical protein | AT5G52660:AT5G52660:Homeodomain-like superfamily protein | 1 | Chr16:33941617–33948775 (+) | 5.685e-11 | |
| Glyma.16G179100 | BCH2 | beta-carotene hydroxylase BCH2 | AT4G25700:BETA-OHASE 1:beta-hydroxylase 1__AT5G52570:BETA-OHASE 2:beta-carotene hydroxylase 2 | 1 | Chr16:33969618–33972333 (-) | 5.685e-11 |
| Glyma.16G189000 | hypothetical protein | NA | 1 | Chr16:35160485–35167548 (-) | 6.833e-11 | |
| Glyma.16G189100 | hypothetical protein | AT1G05190:emb2394:Ribosomal protein L6 family | 1 | Chr16:35170253–35173950 (-) | 6.641e-11 | |
| Glyma.16G194000 | hypothetical protein | AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein | 1 | Chr16:35625666–35634395 (-) | 8.228e-11 | |
| Glyma.16G194100 | hypothetical protein | NA | 1 | Chr16:35633570–35637343 (+) | 8.228e-11 | |
| Glyma.16G209300 | hypothetical protein | NA | 1 | Chr16:36856833–36863994 (-) | 5.957e-11 | |
| Glyma.16G210300 | hypothetical protein | AT1G73340:AT1G73340:Cytochrome P450 superfamily protein | 1 | Chr16:36943073–36948828 (+) | 6.842e-11 | |
| Glyma.16G210400 | hypothetical protein | AT1G73350:AT1G73350:ankyrin repeat protein | 1 | Chr16:36949685–36953467 (+) | 6.842e-11 | |
| Glyma.18G111800 | hypothetical protein | AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein | 1 | Chr18:13278653–13284970 (+) | 6.568e-11 | |
| Glyma.18G112600 | hypothetical protein | NA | 1 | Chr18:13398219–13405422 (+) | 9.564e-13 | |
| Glyma.18G202100 | hypothetical protein | AT3G51850:CPK13:calcium-dependent protein kinase 13 | 1 | Chr18:48258271–48266554 (-) | 2.897e-12 | |
| Glyma.18G236700 | hypothetical protein | AT3G61490:AT3G61490:Pectin lyase-like superfamily protein | 1 | Chr18:52558809–52562720 (+) | 6.277e-13 | |
| Glyma.20G104900 | hypothetical protein | NA | 1 | Chr20:34706863–34713989 (-) | 1.788e-11 | |
| Glyma.20G107200 | hypothetical protein | AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein | 1 | Chr20:34984922–34988496 (+) | 4.924e-11 | |
| Glyma.20G108900 | hypothetical protein | AT4G24175:AT4G24175:kinesin-like protein | 1 | Chr20:35119868–35122488 (+) | 7.991e-11 |