Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39788

Metabolite ID
P39788
Deionized mass
883.4670 Da
Average m/z
884.4708
Average RT
19.7509
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G201700 hypothetical protein NA 3Chr06:18577883–18617874 (+)6.724e-12
Glyma.15G192700 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 3Chr15:21029024–21058079 (-)8.917e-13
Glyma.03G242800 hypothetical protein AT4G08630:AT4G08630:fas-binding factor-like protein 2Chr03:44064511–44073939 (+)2.286e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)5.111e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)5.511e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.062e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.098e-17
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.098e-17
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 2Chr20:35498179–35500565 (-)7.571e-15
Glyma.02G060500 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr02:5473294–5489985 (-)9.56e-13
Glyma.02G060700 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr02:5508103–5512617 (+)1.021e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)8.848e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.207e-12
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)1.416e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.096e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.696e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.696e-12
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)8.014e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)8.014e-11
Glyma.06G223100 hypothetical protein NA 1Chr06:29407485–29421245 (+)2.641e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.69e-12
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)5.848e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.102e-12
Glyma.09G052400 hypothetical protein AT1G31040:AT1G31040:PLATZ transcription factor family protein 1Chr09:4583416–4589291 (-)1.506e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)6.009e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)2.271e-14
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)1.339e-13
Glyma.09G075500 hypothetical protein NA 1Chr09:8234794–8241097 (+)5.991e-11
Glyma.09G075600 hypothetical protein AT1G34630:AT1G34630:uncharacterized protein 1Chr09:8255346–8260648 (-)5.991e-11
Glyma.09G078300 hypothetical protein AT4G29400:AT4G29400:oxidoreductase/transition metal ion-binding protein (DUF3531) 1Chr09:8708840–8718819 (-)5.991e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.01e-19
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.51e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.034e-14
Glyma.09G167000 hypothetical protein NA 1Chr09:39103764–39109664 (-)1.118e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.228e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.289e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.289e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)8.747e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.361e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.361e-12
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)4.33e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.562e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)5.702e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)5.112e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.104e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)5.112e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)5.112e-13
Glyma.15G192400 hypothetical protein AT5G49150:GEX2:gamete expressed 2 1Chr15:20964449–20974340 (+)8.917e-13
Glyma.15G192900 hypothetical protein NA 1Chr15:21108370–21110353 (+)8.917e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)4.109e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)4.109e-12
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.918e-11
Glyma.17G154300 hypothetical protein AT5G46610:AT5G46610:aluminum activated malate transporter family protein 1Chr17:12986575–12990804 (-)9.168e-11
Glyma.17G258700 hypothetical protein AT4G24190:SHD:Chaperone protein htpG family protein 1Chr17:41280124–41284980 (-)4.804e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.013e-14
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)6.013e-14
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)4.494e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.292e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)5.794e-11
Glyma.19G193500 hypothetical protein NA 1Chr19:45118043–45121712 (-)9.816e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.617e-12