Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39777

Metabolite ID
P39777
Deionized mass
982.5106 Da
Average m/z
983.5187
Average RT
19.7454
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
56
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

56 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.759e-11
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)2.103e-11
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.486e-11
Glyma.01G018000 hypothetical protein NA 2Chr01:1736217–1737749 (-)5.221e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.759e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.928e-12
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)8.252e-11
Glyma.03G135300 hypothetical protein NA 1Chr03:35092248–35097578 (+)7.434e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.618e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.618e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.618e-11
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)9.563e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.348e-11
Glyma.06G093300 hypothetical protein NA 1Chr06:7344696–7351172 (+)8.774e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)9.684e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)9.684e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)9.684e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.788e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.788e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.953e-11
Glyma.06G130900 hypothetical protein AT4G27800:TAP38:thylakoid-associated phosphatase 38 1Chr06:10753446–10757827 (+)1.156e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.725e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.205e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.541e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.541e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.615e-13
Glyma.08G296900 hypothetical protein NA 1Chr08:41297891–41301852 (+)9.994e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)6.64e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.645e-12
Glyma.11G077300 hypothetical protein AT2G17890:CPK16:calcium-dependent protein kinase 16__AT5G66210:CPK28:calcium-dependent protein kinase 28__AT4G36070:CPK… 1Chr11:5795953–5801540 (+)6.019e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)3.582e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.504e-13
Glyma.15G224500 hypothetical protein NA 1Chr15:40874637–40886928 (-)5.55e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)4.299e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)2.103e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)2.103e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)2.103e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)2.103e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)5.566e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.825e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.826e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.379e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)5.187e-13
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)2.04e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)2.04e-11
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)3.051e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.609e-13
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)4.777e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.485e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.343e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.343e-11
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)3.852e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)8.039e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.357e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.47e-12
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)8.042e-11