Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39601

Metabolite ID
P39601
Deionized mass
501.2599 Da
Average m/z
502.2638
Average RT
19.6435
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
68
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

68 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 7Chr08:11238871–11242682 (+)1.127e-18
Glyma.08G145300 hypothetical protein AT5G64750:ABR1:Integrase-type DNA-binding superfamily protein 3Chr08:11041449–11043230 (-)2.298e-12
Glyma.08G145600 hypothetical protein AT5G64740:CESA6:cellulose synthase 6__AT4G39350:CESA2:cellulose synthase A2__AT5G09870:CESA5:cellulose synthase 5 3Chr08:11066152–11073328 (-)1.043e-11
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)7.031e-13
Glyma.02G121500 hypothetical protein NA 2Chr02:12065640–12082937 (+)7.639e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.659e-12
Glyma.08G145400 hypothetical protein AT5G09880:AT5G09880:Splicing factor, CC1-like protein 2Chr08:11050835–11058461 (+)1.043e-11
Glyma.08G145700 hypothetical protein AT5G64730:AT5G64730:Transducin/WD40 repeat-like superfamily protein 2Chr08:11083230–11086950 (-)2.045e-14
Glyma.08G146100 hypothetical protein NA 2Chr08:11119305–11124078 (+)7.153e-15
Glyma.08G146200 hypothetical protein NA 2Chr08:11125789–11129806 (-)1.048e-12
Glyma.09G018700 hypothetical protein NA 2Chr09:1470411–1472672 (-)1.564e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)7.735e-12
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.495e-12
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)4.13e-11
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)1.043e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.744e-14
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)1.111e-13
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)1.338e-13
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)1.338e-13
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)1.338e-13
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)1.338e-13
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)1.338e-13
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)1.338e-13
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)1.338e-13
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)7.031e-13
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)1.005e-11
Glyma.02G122100 hypothetical protein NA 1Chr02:12134374–12137612 (+)7.639e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.166e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)8.447e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.763e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)5.768e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.668e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.668e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)2.907e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)1.209e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)8.577e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)6.878e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)3.618e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)4.413e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)7.764e-12
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)3.085e-11
Glyma.08G141800 hypothetical protein AT1G74050:AT1G74050:Ribosomal protein L6 family protein 1Chr08:10823835–10825767 (+)1.043e-11
Glyma.08G142700 hypothetical protein AT1G10500:CPISCA:chloroplast-localized ISCA-like protein 1Chr08:10857723–10860675 (+)4.13e-11
Glyma.08G143200 hypothetical protein AT4G39420:AT4G39420:spatacsin carboxy-terminus protein 1Chr08:10898111–10922975 (-)4.13e-11
Glyma.08G143400 hypothetical protein NA 1Chr08:10941737–10944154 (+)1.004e-11
Glyma.08G143700 hypothetical protein NA 1Chr08:10963025–10963671 (+)4.417e-11
Glyma.08G143900 hypothetical protein AT1G20580:AT1G20580:Small nuclear ribonucleoprotein family protein 1Chr08:10973479–10976014 (-)2.979e-11
Glyma.08G144900 hypothetical protein NA 1Chr08:11022996–11023930 (-)1.043e-11
Glyma.08G145500 hypothetical protein NA 1Chr08:11061447–11062601 (-)1.043e-11
Glyma.08G145900 hypothetical protein AT4G39330:CAD9:cinnamyl alcohol dehydrogenase 9 1Chr08:11092669–11096142 (-)2.045e-14
Glyma.08G146000 hypothetical protein AT5G09850:AT5G09850:Transcription elongation factor (TFIIS) family protein 1Chr08:11103557–11106499 (+)5.121e-13
Glyma.08G146300 hypothetical protein AT5G09820:AT5G09820:Plastid-lipid associated protein PAP / fibrillin family protein 1Chr08:11136129–11139057 (-)9.776e-13
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)1.788e-19
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)2.628e-18
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)5.415e-11
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)8.474e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.541e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.674e-11
Glyma.11G133300 hypothetical protein NA 1Chr11:10188790–10192565 (-)6.645e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.735e-12
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.913e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.913e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.913e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.604e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.139e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.604e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.604e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)1.604e-11