Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39583

Metabolite ID
P39583
Deionized mass
200.1535 Da
Average m/z
201.1612
Average RT
19.6300
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
47
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

47 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G147300 hypothetical protein NA 7Chr08:11238871–11242682 (+)2.098e-22
Glyma.02G121500 hypothetical protein NA 5Chr02:12065640–12082937 (+)5.302e-12
Glyma.08G145300 hypothetical protein AT5G64750:ABR1:Integrase-type DNA-binding superfamily protein 3Chr08:11041449–11043230 (-)6.598e-14
Glyma.08G145700 hypothetical protein AT5G64730:AT5G64730:Transducin/WD40 repeat-like superfamily protein 3Chr08:11083230–11086950 (-)1.37e-16
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)8.068e-12
Glyma.08G141200 hypothetical protein NA 2Chr08:10789258–10792803 (-)9.329e-13
Glyma.08G142400 WRKY6 WRKY transcription factor 6 NA 2Chr08:10843433–10846761 (-)9.217e-14
Glyma.08G143200 hypothetical protein AT4G39420:AT4G39420:spatacsin carboxy-terminus protein 2Chr08:10898111–10922975 (-)9.217e-14
Glyma.08G144000 hypothetical protein NA 2Chr08:10981530–10989743 (+)9.217e-14
Glyma.08G145400 hypothetical protein AT5G09880:AT5G09880:Splicing factor, CC1-like protein 2Chr08:11050835–11058461 (+)6.598e-14
Glyma.08G145500 hypothetical protein NA 2Chr08:11061447–11062601 (-)6.598e-14
Glyma.08G145600 hypothetical protein AT5G64740:CESA6:cellulose synthase 6__AT4G39350:CESA2:cellulose synthase A2__AT5G09870:CESA5:cellulose synthase 5 2Chr08:11066152–11073328 (-)6.598e-14
Glyma.08G146100 hypothetical protein NA 2Chr08:11119305–11124078 (+)2.317e-16
Glyma.08G146200 hypothetical protein NA 2Chr08:11125789–11129806 (-)1.926e-14
Glyma.11G133300 hypothetical protein NA 2Chr11:10188790–10192565 (-)5.033e-11
Glyma.02G122100 hypothetical protein NA 1Chr02:12134374–12137612 (+)1.899e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)1.429e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)1.713e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)5.609e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)5.609e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)5.609e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)4.981e-11
Glyma.07G071000 hypothetical protein AT4G00480:ATMYC1:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr07:6464646–6470484 (+)7.897e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)9.497e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)2.121e-11
Glyma.08G109700 GmJ1 AT4G13830:J20:DNAJ-like 20 1Chr08:8419650–8422508 (+)5.102e-11
Glyma.08G111700 hypothetical protein NA 1Chr08:8604527–8606424 (-)3.194e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)5.21e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)5.21e-11
Glyma.08G141500 hypothetical protein AT4G39540:SK2:shikimate kinase 2 1Chr08:10806339–10811196 (-)9.329e-13
Glyma.08G141800 hypothetical protein AT1G74050:AT1G74050:Ribosomal protein L6 family protein 1Chr08:10823835–10825767 (+)6.598e-14
Glyma.08G142700 hypothetical protein AT1G10500:CPISCA:chloroplast-localized ISCA-like protein 1Chr08:10857723–10860675 (+)4.774e-13
Glyma.08G143000 hypothetical protein AT3G57940:AT3G57940:GNAT acetyltransferase (DUF699)__AT1G10490:AT1G10490:GNAT acetyltransferase (DUF699) 1Chr08:10872816–10885213 (-)9.217e-14
Glyma.08G143400 hypothetical protein NA 1Chr08:10941737–10944154 (+)5.418e-12
Glyma.08G143700 hypothetical protein NA 1Chr08:10963025–10963671 (+)9.472e-12
Glyma.08G143900 hypothetical protein AT1G20580:AT1G20580:Small nuclear ribonucleoprotein family protein 1Chr08:10973479–10976014 (-)6.663e-12
Glyma.08G144600 hypothetical protein NA 1Chr08:10997491–11002758 (+)9.217e-14
Glyma.08G144700 hypothetical protein NA 1Chr08:11004138–11009322 (-)9.217e-14
Glyma.08G144900 hypothetical protein NA 1Chr08:11022996–11023930 (-)6.598e-14
Glyma.08G145000 hypothetical protein NA 1Chr08:11025299–11026023 (+)1.597e-12
Glyma.08G145100 hypothetical protein NA 1Chr08:11027960–11032612 (-)1.597e-12
Glyma.08G145900 hypothetical protein AT4G39330:CAD9:cinnamyl alcohol dehydrogenase 9 1Chr08:11092669–11096142 (-)1.37e-16
Glyma.08G146000 hypothetical protein AT5G09850:AT5G09850:Transcription elongation factor (TFIIS) family protein 1Chr08:11103557–11106499 (+)7.449e-15
Glyma.08G146300 hypothetical protein AT5G09820:AT5G09820:Plastid-lipid associated protein PAP / fibrillin family protein 1Chr08:11136129–11139057 (-)2.288e-14
Glyma.08G147200 hypothetical protein AT3G18710:PUB29:plant U-box 29__AT5G64660:CMPG2:CYS, MET, PRO, and GLY protein 2 1Chr08:11225587–11227445 (+)6.77e-23
Glyma.08G147400 hypothetical protein AT1G48870:AT1G48870:Transducin/WD40 repeat-like superfamily protein 1Chr08:11248804–11251957 (+)8.682e-22
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)6.824e-11