Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39554

Metabolite ID
P39554
Deionized mass
551.3141 Da
Average m/z
552.3203
Average RT
19.6172
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
67
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

67 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)8.519e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.317e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.55e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.499e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.499e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.499e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)5.812e-14
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)5.157e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)3.42e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)2.107e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)6.292e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.495e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.883e-13
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)8.349e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)8.349e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)4.678e-11
Glyma.04G062500 hypothetical protein NA 1Chr04:5158262–5163060 (-)7.143e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.672e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.779e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)6.24e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.001e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)7.234e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)7.234e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.643e-12
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)2.685e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)8.519e-13
Glyma.08G118600 hypothetical protein AT1G29300:UNE1:intracellular protein transporter, putative (DUF641) 1Chr08:9169843–9172229 (-)1.759e-11
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)8.239e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.55e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.55e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.55e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.55e-12
Glyma.08G180900 hypothetical protein AT5G64570:XYL4:beta-D-xylosidase 4__AT5G09730:BXL3:beta-xylosidase 3 1Chr08:14516542–14521137 (+)8.529e-11
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)8.188e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)8.188e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.745e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.887e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.699e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)9.146e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)6.228e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.813e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.499e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.499e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.499e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.499e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.499e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.202e-12
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)5.157e-14
Glyma.14G197700 hypothetical protein AT5G58470:TAF15b:TBP-associated factor 15B 1Chr14:46291986–46298337 (+)9.512e-12
Glyma.14G198000 hypothetical protein NA 1Chr14:46334117–46336863 (+)9.512e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.42e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.898e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.294e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)2.591e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)1.5e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)1.5e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.251e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.623e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)6.69e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)1.132e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)1.132e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)8.709e-12
Glyma.18G267500 hypothetical protein NA 1Chr18:55179516–55181798 (-)2.238e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.74e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.798e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.717e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.167e-12