Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39516

Metabolite ID
P39516
Deionized mass
138.1027 Da
Average m/z
277.2126
Average RT
19.5856
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
48
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

48 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 6Chr19:3335896–3343744 (+)3.222e-18
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)7.763e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.875e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.875e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)3.222e-18
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.986e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)4.236e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.259e-13
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.411e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.247e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.247e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.231e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)3.689e-14
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)4.024e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)2.031e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.516e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)4.519e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)2.592e-11
Glyma.09G056400 hypothetical protein NA 1Chr09:5080364–5088515 (-)6.076e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)4.069e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)3.975e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.597e-11
Glyma.10G229600 hypothetical protein AT4G23630:BTI1:VIRB2-interacting protein 1 1Chr10:45968793–45973482 (-)2.009e-12
Glyma.11G077300 hypothetical protein AT2G17890:CPK16:calcium-dependent protein kinase 16__AT5G66210:CPK28:calcium-dependent protein kinase 28__AT4G36070:CPK… 1Chr11:5795953–5801540 (+)4.745e-11
Glyma.11G094700 hypothetical protein AT5G08280:HEMC:hydroxymethylbilane synthase 1Chr11:7190632–7195838 (-)4.481e-11
Glyma.11G095000 hypothetical protein NA 1Chr11:7206492–7209711 (-)4.945e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)7.782e-14
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)4.628e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)4.628e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.875e-12
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)1.591e-12
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)4.137e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)4.959e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)6.64e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)4.103e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)4.103e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.148e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.148e-13
Glyma.19G026900 hypothetical protein NA 1Chr19:3331196–3333961 (-)2.681e-11
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)5.261e-12
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)4.627e-12
Glyma.19G030100 hypothetical protein NA 1Chr19:3732644–3733945 (+)6.929e-11
Glyma.19G030500 GmAT133 NA 1Chr19:3779017–3781453 (-)6.929e-11
Glyma.19G031100 hypothetical protein AT3G02170:LNG2:longifolia2 1Chr19:3839225–3845784 (-)8.205e-11
Glyma.19G150000 hypothetical protein AT3G58060:AT3G58060:Cation efflux family protein 1Chr19:41018746–41025024 (+)1.168e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)3.186e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)3.403e-11
Glyma.20G129900 hypothetical protein NA 1Chr20:37091399–37092697 (-)1.429e-11