Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39464

Metabolite ID
P39464
Deionized mass
273.1778 Da
Average m/z
274.1868
Average RT
19.5611
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
157
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

157 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.672e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.785e-12
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.811e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)8.033e-15
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)1.902e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)5.497e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 2Chr06:48170133–48173010 (-)9.912e-12
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.338e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 2Chr07:1697119–1698666 (+)1.253e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)3.446e-11
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)2.095e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)2.095e-13
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.023e-12
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)5.729e-15
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)3.657e-12
Glyma.01G021600 hypothetical protein AT5G65540:AT5G65540:transcription initiation factor TFIID subunit 1Chr01:2189923–2194362 (-)1.221e-12
Glyma.01G153300 hypothetical protein AT5G45340:CYP707A3:cytochrome P450, family 707, subfamily A, polypeptide 3__AT4G19230:CYP707A1:cytochrome P450, family … 1Chr01:49049375–49052359 (-)4.125e-11
Glyma.02G293100 hypothetical protein AT3G20800:AT3G20800:Cell differentiation, Rcd1-like protein 1Chr02:47183443–47188007 (-)2.201e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)2.455e-11
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 1Chr03:2007617–2009871 (+)6.062e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)3.481e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)7.427e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.718e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)4.276e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)9.42e-12
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 1Chr04:7187985–7192897 (+)9.522e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)6.247e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.606e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)3.682e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.786e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.786e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.098e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.165e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.165e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.165e-13
Glyma.05G188500 hypothetical protein AT3G27740:CARA:carbamoyl phosphate synthetase A 1Chr05:37445235–37448125 (+)1.019e-11
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)6.356e-12
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)2.145e-12
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)2.225e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.525e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)2.377e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.239e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.668e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.792e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)2.943e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)2.943e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)2.943e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.329e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.329e-13
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)2.475e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.436e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)1.646e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.436e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.436e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)1.646e-11
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)1.13e-11
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)2.044e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)2.044e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.848e-11
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)3.082e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)1.325e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)1.325e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)2.309e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)2.309e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)7.649e-12
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)2.591e-14
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)3.446e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)3.446e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)3.446e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)3.446e-11
Glyma.08G139300 hypothetical protein AT2G22125:CSI1:binding protein 1Chr08:10653279–10664544 (-)1.909e-11
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)9.723e-11
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)8.81e-11
Glyma.09G057000 hypothetical protein NA 1Chr09:5140625–5145658 (+)8.81e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)1.179e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)1.252e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr09:5571201–5579976 (-)2.359e-13
Glyma.09G060300 hypothetical protein AT5G57140:PAP28:purple acid phosphatase 28 1Chr09:5609003–5612943 (+)3.909e-11
Glyma.09G060600 hypothetical protein AT3G28430:AT3G28430:CLEC16A-like protein 1Chr09:5661672–5675338 (-)7.355e-11
Glyma.09G069400 hypothetical protein NA 1Chr09:7055066–7058933 (+)7.251e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.135e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)6.667e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.217e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.217e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.217e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.217e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.141e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.657e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)5.206e-12
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.373e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.757e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)6.707e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)6.707e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)6.707e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)6.707e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)7.29e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)7.29e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)7.29e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)5.28e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.101e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.101e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.048e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.761e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)7.901e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.055e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.055e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.586e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.785e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)7.061e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)8.388e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)8.388e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.095e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.56e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.56e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.56e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)7.287e-13
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)9.094e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)4.152e-12
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)3.844e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.516e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)1.901e-13
Glyma.14G190300 hypothetical protein AT2G04240:XERICO:RING/U-box superfamily protein 1Chr14:45531920–45533895 (-)2.597e-14
Glyma.14G190400 hypothetical protein AT3G07650:COL9:CONSTANS-like 9 1Chr14:45536719–45544087 (-)2.597e-14
Glyma.15G111000 hypothetical protein AT1G62305:AT1G62305:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein__AT1G11940:AT1G11940:Cor… 1Chr15:8692505–8697919 (-)2.578e-11
Glyma.15G120800 hypothetical protein AT5G47730:AT5G47730:Sec14p-like phosphatidylinositol transfer family protein 1Chr15:9552374–9557218 (-)2.698e-11
Glyma.15G121000 hypothetical protein NA 1Chr15:9563579–9565862 (+)2.183e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.158e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.122e-12
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)3.525e-12
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.177e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)2.657e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)5.918e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)3.058e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.672e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)3.147e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.811e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.811e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.811e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.811e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)1.716e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)1.175e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)2.624e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)1.902e-12
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)1.902e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.76e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.764e-15
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)3.468e-13
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)5.587e-11
Glyma.18G072800 hypothetical protein AT1G55760:AT1G55760:BTB/POZ domain-containing protein 1Chr18:6873417–6878947 (-)7.15e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.289e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)8.09e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.421e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.421e-12
Glyma.20G217700 hypothetical protein AT1G32810:AT1G32810:RING/FYVE/PHD zinc finger superfamily protein 1Chr20:45347424–45357977 (-)1.774e-12
Glyma.20G218100 hypothetical protein AT1G32900:GBSS1:UDP-Glycosyltransferase superfamily protein 1Chr20:45387265–45391879 (-)8.165e-11
Glyma.20G218500 hypothetical protein AT4G10465:AT4G10465:Heavy metal transport/detoxification superfamily protein__AT2G18196:AT2G18196:Heavy metal transport… 1Chr20:45428471–45432099 (+)7.731e-11
Glyma.20G219100 hypothetical protein AT3G02830:ZFN1:zinc finger protein 1 1Chr20:45490419–45496014 (+)6.898e-11