Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39283

Metabolite ID
P39283
Deionized mass
687.3469 Da
Average m/z
688.3522
Average RT
19.4592
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
53
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

53 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 7Chr03:2202325–2234931 (+)7.646e-12
Glyma.03G021000 hypothetical protein NA 4Chr03:2148298–2162954 (-)2.547e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 3Chr03:2240686–2246512 (-)3.081e-11
Glyma.07G100400 hypothetical protein AT3G18050:AT3G18050:GPI-anchored protein 3Chr07:9523110–9526319 (+)6.537e-18
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.291e-12
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 2Chr14:47664851–47670630 (+)1.245e-12
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)2.515e-11
Glyma.03G021100 hypothetical protein AT1G12650:AT1G12650:rRNA biosis RRP36-like protein 1Chr03:2162406–2167712 (+)3.113e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.394e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.329e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.603e-11
Glyma.03G039900 hypothetical protein NA 1Chr03:4988423–4991582 (-)2.841e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)4.84e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.396e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.864e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)8.186e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.056e-13
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.056e-13
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)5.387e-14
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.584e-13
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)2.083e-12
Glyma.06G305200 hypothetical protein AT3G21690:AT3G21690:MATE efflux family protein 1Chr06:49420013–49426780 (-)2.125e-14
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)8.422e-13
Glyma.07G062300 hypothetical protein AT2G46220:AT2G46220:DUF2358 family protein (DUF2358) 1Chr07:5518907–5522005 (+)9.003e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.996e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.996e-11
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)1.108e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)4.319e-11
Glyma.07G093700 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr07:8723740–8734056 (-)2.895e-12
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)4.182e-14
Glyma.07G096900 GmChl 2 AT1G19670:CLH1:chlorophyllase 1 1Chr07:9083837–9085839 (-)1.91e-12
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)7.59e-11
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 1Chr09:6509441–6524102 (+)8.219e-13
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)3.822e-11
Glyma.13G185400 hypothetical protein NA 1Chr13:29936606–29937420 (+)1.802e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.163e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)8.124e-12
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)1.258e-11
Glyma.14G213400 hypothetical protein NA 1Chr14:47844823–47847028 (+)3.511e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.597e-11
Glyma.16G041700 hypothetical protein AT1G64770:PnsB2:NDH-dependent cyclic electron flow 1 1Chr16:3909907–3912569 (+)7.019e-11
Glyma.16G041800 hypothetical protein NA 1Chr16:3914214–3917387 (-)4.491e-12
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)3.804e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)2.205e-12
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.694e-11
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)4.516e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.192e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)9.935e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)6.603e-12
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)5.074e-11
Glyma.18G251400 hypothetical protein NA 1Chr18:53754942–53759244 (-)6.453e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)3.34e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)3.34e-12