Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P39131

Metabolite ID
P39131
Deionized mass
308.0873 Da
Average m/z
617.1843
Average RT
19.3942
Adduct
[2M+H]+
Association scope
Overlapping genes only
Associated genes
102
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

102 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.996e-15
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.536e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 3Chr20:34984922–34988496 (+)1.715e-15
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.124e-11
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)1.564e-14
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)1.564e-14
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)1.564e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.595e-16
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.595e-16
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)2.388e-12
Glyma.19G005200 hypothetical protein AT3G27640:AT3G27640:Transducin/WD40 repeat-like superfamily protein 2Chr19:472201–476152 (-)1.532e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.996e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.253e-13
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)1.179e-12
Glyma.01G175700 hypothetical protein NA 1Chr01:51244446–51248246 (+)7.2e-11
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)6.819e-14
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)5.331e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)3.93e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.48e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)5.265e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)1.977e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)6.304e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.401e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)9.924e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)9.924e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)9.924e-12
Glyma.05G221700 hypothetical protein NA 1Chr05:40115849–40120124 (+)5.818e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)6.079e-11
Glyma.05G224200 hypothetical protein NA 1Chr05:40307329–40312025 (+)3.098e-14
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)3.733e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)3.161e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)6.568e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)6.568e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)6.568e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)6.568e-11
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)2.767e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.823e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.399e-22
Glyma.05G237500 hypothetical protein AT3G18290:BTS:zinc finger protein-like protein 1Chr05:41383632–41394607 (+)7.077e-12
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)6.63e-18
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)8.672e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)4.235e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.124e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.124e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.124e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.124e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)7.052e-11
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)8.768e-12
Glyma.09G270000 hypothetical protein AT3G54220:SCR:GRAS family transcription factor 1Chr09:48704737–48708820 (-)3.482e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)2.795e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)4.994e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)9.709e-13
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)1.564e-14
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)1.564e-14
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)1.564e-14
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)1.514e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)1.564e-14
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)1.564e-14
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)7.233e-14
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.001e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)5.165e-11
Glyma.11G095100 hypothetical protein NA 1Chr11:7212438–7214276 (-)9.763e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)8.56e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.434e-15
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.434e-15
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.595e-16
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.185e-11
Glyma.13G162300 hypothetical protein NA 1Chr13:27773991–27778719 (-)3.782e-11
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)7.052e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)4.723e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.214e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)4.723e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)4.723e-11
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)5.036e-11
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)5.036e-11
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)2.046e-11
Glyma.16G024800 hypothetical protein AT4G31010:AT4G31010:RNA-binding CRS1 / YhbY (CRM) domain-containing protein 1Chr16:2407161–2410997 (-)1.171e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.536e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.536e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.536e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.536e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.387e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.315e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.493e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)8.068e-11
Glyma.16G140000 hypothetical protein AT5G01820:SR1:serine/threonine protein kinase 1 1Chr16:29738375–29739010 (+)7.994e-13
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)8.389e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.02e-12
Glyma.19G006200 hypothetical protein NA 1Chr19:590763–595425 (+)3.161e-12
Glyma.19G006900 hypothetical protein AT5G14700:AT5G14700:NAD(P)-binding Rossmann-fold superfamily protein 1Chr19:686556–692466 (-)1.859e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)9.414e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)9.414e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)5.054e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)3.337e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.499e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.046e-15
Glyma.20G099200 hypothetical protein AT3G55410:AT3G55410:2-oxoglutarate dehydrogenase, E1 component__AT5G65750:AT5G65750:2-oxoglutarate dehydrogenase, E1 co… 1Chr20:34242852–34248956 (-)5.98e-12
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)1.236e-11
Glyma.20G100900 hypothetical protein AT3G20015:AT3G20015:Eukaryotic aspartyl protease family protein 1Chr20:34421932–34423966 (-)8.93e-11
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)1.296e-14
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)3.235e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)5.151e-11