Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38775

Metabolite ID
P38775
Deionized mass
1022.4795 Da
Average m/z
1023.4868
Average RT
19.1897
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
101
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

101 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.311e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 4Chr20:34984922–34988496 (+)2.914e-15
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)1.2e-11
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.889e-13
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)7.139e-11
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)4.65e-13
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)4.781e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.124e-13
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.124e-13
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.124e-13
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.342e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)7.177e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)7.176e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)7.977e-14
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)5.123e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.311e-12
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)1.673e-15
Glyma.19G029800 hypothetical protein NA 2Chr19:3724518–3729860 (-)2.029e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)7.139e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.886e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.532e-15
Glyma.04G014300 hypothetical protein AT1G20880:AT1G20880:RNA-binding (RRM/RBD/RNP motifs) family protein 1Chr04:1101709–1106543 (+)2.594e-11
Glyma.04G014600 hypothetical protein NA 1Chr04:1119108–1123175 (+)2.594e-11
Glyma.04G015500 hypothetical protein AT2G33670:MLO5:Seven transmembrane MLO family protein 1Chr04:1176657–1181234 (-)3.194e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.84e-15
Glyma.04G237000 hypothetical protein AT1G31910:AT1G31910:GHMP kinase family protein 1Chr04:50558708–50569783 (+)5.237e-13
Glyma.04G237200 hypothetical protein AT3G52210:AT3G52210:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr04:50576216–50582296 (-)5.237e-13
Glyma.04G237500 hypothetical protein AT5G15940:AT5G15940:NAD(P)-binding Rossmann-fold superfamily protein__AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold … 1Chr04:50604264–50609423 (+)5.237e-13
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)3.188e-11
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)5.515e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)8.051e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.581e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)4.591e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.664e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.519e-11
Glyma.06G260900 hypothetical protein NA 1Chr06:44662225–44665728 (-)6.672e-12
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)1.2e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)1.2e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.782e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.701e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.781e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.781e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.781e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.781e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.188e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)7.391e-12
Glyma.08G338900 hypothetical protein NA 1Chr08:45536950–45543029 (-)1.458e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.26e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.421e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.308e-12
Glyma.09G186700 hypothetical protein AT1G20050:HYD1:C-8,7 sterol isomerase 1Chr09:41147591–41150204 (+)6.908e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.174e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)7.078e-12
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)7.078e-12
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)9.85e-13
Glyma.09G269100 hypothetical protein NA 1Chr09:48651429–48653656 (-)3.429e-11
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)1.262e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)2.223e-13
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)6.509e-14
Glyma.09G272300 hypothetical protein AT5G01950:AT5G01950:Leucine-rich repeat protein kinase family protein 1Chr09:48873276–48883421 (-)5.433e-11
Glyma.09G272800 hypothetical protein AT3G08670:AT3G08670:serine/arginine repetitive matrix-like protein 1Chr09:48916725–48921396 (+)5.433e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.124e-13
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.124e-13
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.124e-13
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.02e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.124e-13
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.124e-13
Glyma.09G276300 WNK10 AT3G51630:WNK5:with no lysine (K) kinase 5 1Chr09:49161113–49166087 (+)1.291e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)2.974e-12
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.649e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)4.649e-12
Glyma.10G037300 hypothetical protein AT3G54670:TTN8:Structural maintenance of chromosomes (SMC) family protein 1Chr10:3270545–3283318 (-)6.511e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)8.648e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)4.356e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)6.697e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)4.172e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.723e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.567e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.567e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)3.65e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)3.65e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.469e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.469e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)7.177e-12
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)2.656e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)1.3e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.041e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)9.959e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)9.959e-11
Glyma.17G004500 hypothetical protein AT5G47800:AT5G47800:Phototropic-responsive NPH3 family protein 1Chr17:444580–451107 (-)3.393e-11
Glyma.17G005900 hypothetical protein AT4G17215:AT4G17215:Pollen Ole e 1 allergen and extensin family protein__AT2G40113:AT2G40113:Pollen Ole e 1 allergen an… 1Chr17:546212–548525 (+)3.393e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)5.936e-13
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)1.501e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.087e-15
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.087e-15
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)4.851e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.066e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.877e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.275e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)2.113e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)1.723e-12