Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38394

Metabolite ID
P38394
Deionized mass
1013.5218 Da
Average m/z
1014.5314
Average RT
19.0030
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
73
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

73 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)4.742e-12
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)1.118e-13
Glyma.09G058900 hypothetical protein NA 2Chr09:5397968–5404650 (-)2.102e-12
Glyma.09G066400 hypothetical protein AT4G29790:AT4G29790:serine/arginine repetitive matrix protein 2Chr09:6509441–6524102 (+)1.169e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)3.208e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.962e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.962e-13
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr16:1877938–1879947 (-)1.967e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 2Chr16:26324650–26336836 (+)9.676e-13
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)7.1e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)7.1e-11
Glyma.02G091800 hypothetical protein NA 1Chr02:8129908–8133455 (+)1.926e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)2.952e-11
Glyma.03G169700 hypothetical protein AT2G20240:TRM17:GPI-anchored adhesin-like protein, putative (DUF3741)__AT4G28760:TRM20:methyl-coenzyme M reductase II s… 1Chr03:38442950–38448706 (+)1.43e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.219e-14
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.303e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)9.828e-13
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)8.142e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)8.142e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.207e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.207e-14
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)4.742e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)4.742e-12
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)9.86e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)9.861e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)7.901e-12
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)1.964e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)1.964e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)7.265e-12
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)7.265e-12
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)1.964e-11
Glyma.07G095400 hypothetical protein NA 1Chr07:8914725–8920132 (+)1.668e-11
Glyma.07G097000 hypothetical protein AT1G19670:CLH1:chlorophyllase 1 1Chr07:9118318–9120182 (-)3.529e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.549e-12
Glyma.09G067600 hypothetical protein NA 1Chr09:6804057–6804365 (+)2.121e-13
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.97e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)6.391e-11
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)6.391e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.39e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.39e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)4.207e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.962e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.962e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.586e-12
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)1.543e-11
Glyma.14G044000 hypothetical protein AT5G62290:AT5G62290:nucleotide-sensitive chloride conductance regulator (ICln) family protein 1Chr14:3343611–3346483 (+)1.736e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.371e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.774e-11
Glyma.15G154600 hypothetical protein AT2G34900:IMB1:Transcription factor GTE6 1Chr15:12869005–12877308 (-)9.487e-11
Glyma.15G154800 hypothetical protein AT1G30840:PUP4:purine permease 4 1Chr15:12885652–12899379 (+)9.487e-11
Glyma.16G018000 hypothetical protein NA 1Chr16:1601748–1607341 (-)1.951e-11
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)4.722e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)7.502e-15
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)7.503e-15
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)3.763e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)1.569e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)9.607e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)2.683e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)2.683e-11
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.259e-13
Glyma.16G208100 hypothetical protein AT5G23530:CXE18:carboxyesterase 18 1Chr16:36776806–36778169 (+)1.033e-11
Glyma.16G208400 hypothetical protein NA 1Chr16:36789890–36801967 (-)3.253e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)9.502e-11
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)6.045e-13
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)9.574e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.037e-16
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.036e-16
Glyma.19G144200 hypothetical protein AT2G42280:FBH4:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr19:40545843–40548762 (+)8.011e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)4.119e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.428e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.269e-13
Glyma.20G099900 hypothetical protein AT5G23390:AT5G23390:polygalacturonase inhibitor (DUF639) 1Chr20:34312783–34318966 (+)6.935e-11
Glyma.20G217500 hypothetical protein AT5G41950:AT5G41950:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:45312584–45322950 (-)5.607e-11