Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38310

Metabolite ID
P38310
Deionized mass
748.4637 Da
Average m/z
749.4684
Average RT
18.9726
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)6.392e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)8.027e-13
Glyma.07G058900 hypothetical protein NA 2Chr07:5268461–5272348 (+)4.109e-11
Glyma.07G059200 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 2Chr07:5284646–5293001 (-)4.812e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.041e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.882e-12
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)6.481e-11
Glyma.18G226300 hypothetical protein NA 2Chr18:51471540–51498344 (+)1.187e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.278e-11
Glyma.01G022300 hypothetical protein NA 1Chr01:2215383–2217438 (+)2.709e-11
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)6.553e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)7.337e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)2.122e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)9.079e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)9.079e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.634e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.854e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.854e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.854e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)5.44e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.197e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.832e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.345e-12
Glyma.07G058600 hypothetical protein AT5G12230:MED19A:mediator of RNA polymerase II transcription subunit 19a-like protein 1Chr07:5240996–5247125 (-)2.228e-11
Glyma.07G058700 hypothetical protein AT1G30240:AT1G30240:proline-, glutamic acid/leucine-rich protein 1Chr07:5251199–5260710 (+)2.227e-11
Glyma.07G059100 hypothetical protein NA 1Chr07:5282519–5283075 (-)4.812e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.041e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.041e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.041e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.041e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)4.802e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.782e-15
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.782e-15
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)2.429e-18
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.067e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.067e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.067e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.067e-11
Glyma.10G156300 hypothetical protein AT3G05210:ERCC1:nucleotide repair protein 1Chr10:39053531–39057116 (-)2.088e-13
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)7.349e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.088e-12
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.154e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)6.481e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)4.271e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.749e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)7.232e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.749e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.749e-13
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)6.393e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)6.393e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)6.393e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)6.393e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)7.367e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.56e-12
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)2.649e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)3.503e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)3.503e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)6.134e-13
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)1.012e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)2.484e-11
Glyma.19G187900 hypothetical protein AT2G36720:AT2G36720:Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 1Chr19:44599748–44609219 (-)7.531e-13