Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P38057

Metabolite ID
P38057
Deionized mass
473.2546 Da
Average m/z
474.2603
Average RT
18.8573
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
39
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

39 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 7Chr16:36856833–36863994 (-)1.238e-13
Glyma.16G210200 hypothetical protein NA 5Chr16:36933402–36938940 (+)2.638e-14
Glyma.04G096800 hypothetical protein AT4G24460:CLT2:CRT (chloroquine-resistance transporter)-like transporter 2 4Chr04:8747857–8778229 (-)4.207e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 3Chr16:36943073–36948828 (+)2.585e-16
Glyma.18G107900 hypothetical protein AT1G06490:CalS7:glucan synthase-like 7 3Chr18:12220182–12260477 (+)2.226e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 2Chr03:2202325–2234931 (+)9.806e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.425e-12
Glyma.02G044600 hypothetical protein NA 1Chr02:4131829–4134877 (+)2.938e-11
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)3.109e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.301e-11
Glyma.04G096500 hypothetical protein NA 1Chr04:8664088–8675605 (+)4.208e-11
Glyma.04G096600 hypothetical protein AT1G58250:SAB:HYPERSENSITIVE TO PI STARVATION 4 1Chr04:8693806–8724007 (-)4.208e-11
Glyma.04G096900 hypothetical protein NA 1Chr04:8778953–8796458 (-)4.208e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.104e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.059e-13
Glyma.06G204900 hypothetical protein AT1G74120:AT1G74120:Mitochondrial transcription termination factor family protein 1Chr06:19353866–19354929 (+)2.575e-11
Glyma.06G285000 hypothetical protein AT2G42390:AT2G42390:kinase C substrate, heavy chain-like protein 1Chr06:47349868–47363027 (-)2.89e-12
Glyma.08G117100 hypothetical protein AT2G34190:AT2G34190:Xanthine/uracil permease family protein 1Chr08:9032236–9036159 (+)9.522e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)7.571e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)7.571e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.425e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)2.425e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.425e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.425e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)4.006e-12
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)4.006e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)5.531e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)6.73e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)6.73e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)4.541e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.682e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)1.021e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)1.021e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)1.021e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.122e-12
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)2.152e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)2.585e-16
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.303e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)3.743e-12