Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P37800

Metabolite ID
P37800
Deionized mass
272.0560 Da
Average m/z
273.0646
Average RT
18.7767
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
130
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

130 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.61e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)5.552e-13
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)4.943e-14
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)6.287e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)9.29e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)1.509e-13
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)6.886e-14
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.255e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.255e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)4.833e-11
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)2.52e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)5.552e-13
Glyma.20G021900 hypothetical protein AT5G37340:AT5G37340:ZPR1 zinc-finger domain protein 2Chr20:2227480–2247807 (+)5.443e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.202e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.202e-11
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)3.936e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.534e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)6.771e-14
Glyma.02G138200 hypothetical protein NA 1Chr02:14307786–14310106 (-)4.396e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)1.935e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)6.249e-12
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 1Chr03:169480–172727 (+)7.047e-13
Glyma.03G016900 hypothetical protein NA 1Chr03:1702419–1707451 (+)6.724e-11
Glyma.03G017800 hypothetical protein AT4G00770:TRM9:DUF4378 domain protein 1Chr03:1780719–1783735 (+)9.262e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)7.858e-11
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)1.762e-11
Glyma.03G022200 hypothetical protein NA 1Chr03:2326204–2327764 (+)1.057e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.015e-12
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)7.591e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)2.146e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.095e-14
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)1.914e-14
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)6.575e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.094e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.938e-14
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)2.31e-14
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)2.31e-14
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.974e-16
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.175e-15
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.175e-15
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.175e-15
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)7.108e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)4.745e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)4.745e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)4.745e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)4.745e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.738e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.761e-17
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.965e-12
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.965e-12
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.965e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.086e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.086e-11
Glyma.06G289400 hypothetical protein AT2G20580:RPN1A:26S proteasome regulatory subunit S2 1A__AT4G28470:RPN1B:26S proteasome regulatory subunit S2 1B 1Chr06:47813934–47821512 (+)9.471e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)6.237e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.139e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)6.237e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)6.236e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.139e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)5.56e-13
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)8.227e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)5.83e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.842e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.503e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.424e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.376e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)3.271e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)4.057e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.254e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.254e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.253e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.253e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.219e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.15e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)6.295e-18
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)6.295e-18
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.787e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.787e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.391e-14
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.391e-14
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)1.911e-12
Glyma.12G203300 hypothetical protein AT4G03430:EMB2770:pre-mRNA splicing factor-like protein 1Chr12:36371465–36377700 (-)7.649e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.341e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.886e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.766e-11
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)3.931e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)2.581e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)2.581e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.255e-13
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)5.424e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)2.478e-14
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)2.478e-14
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)2.478e-14
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.145e-14
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)2.898e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.153e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.599e-11
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)4.833e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.556e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.556e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)7.968e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.046e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)5.693e-12
Glyma.16G003000 hypothetical protein AT1G58025:AT1G58025:DNA-binding bromodomain-containing protein 1Chr16:164584–168767 (+)1.169e-12
Glyma.16G003200 hypothetical protein NA 1Chr16:172940–178668 (-)1.169e-12
Glyma.16G003600 hypothetical protein AT5G49945:AT5G49945: 1Chr16:198072–202486 (-)2.018e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)3.163e-12
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)5.728e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.093e-14
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.547e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.374e-11
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)2.52e-12
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)3.347e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)3.255e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)2.622e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)3.255e-11
Glyma.18G100200 hypothetical protein NA 1Chr18:10512806–10522231 (+)3.255e-11
Glyma.18G111800 hypothetical protein AT1G32910:AT1G32910:HXXXD-type acyl-transferase family protein 1Chr18:13278653–13284970 (+)6.225e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.686e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.686e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)7.924e-11
Glyma.19G193500 hypothetical protein NA 1Chr19:45118043–45121712 (-)4.209e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)2.406e-12
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)9.341e-16
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.036e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.017e-20
Glyma.20G022000 hypothetical protein NA 1Chr20:2262949–2267229 (+)5.443e-11
Glyma.20G105100 hypothetical protein NA 1Chr20:34737596–34737811 (-)1.377e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.084e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)1.485e-11