Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P36889

Metabolite ID
P36889
Deionized mass
240.0879 Da
Average m/z
241.0955
Average RT
18.3555
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
123
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

123 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)3.257e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 4Chr19:3303658–3312907 (-)1.874e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.874e-12
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)5.34e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.484e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)8.718e-12
Glyma.03G120100 hypothetical protein AT5G26120:ASD2:alpha-L-arabinofuranosidase 2 2Chr03:33174618–33180955 (+)3.619e-11
Glyma.05G149900 hypothetical protein NA 2Chr05:34389242–34393621 (-)1.668e-12
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)2.743e-12
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)7.568e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)7.568e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)7.568e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)2.994e-16
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 2Chr12:3949453–3957386 (-)2.256e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)3.251e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 2Chr12:36289704–36295084 (-)1.524e-12
Glyma.18G100200 hypothetical protein NA 2Chr18:10512806–10522231 (+)4.069e-12
Glyma.18G243300 hypothetical protein AT3G24090:GFAT:putative glucosamine-fructose-6-phosphate aminotransferase 2Chr18:53151480–53157909 (+)8.008e-16
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)9.028e-13
Glyma.19G026200 hypothetical protein AT5G39420:cdc2cAt:CDC2C 2Chr19:3274957–3281320 (+)4.632e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)2.805e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)5.34e-14
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)8.718e-12
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)3.902e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.771e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.771e-13
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.796e-11
Glyma.02G204500 hypothetical protein NA 1Chr02:38980978–38982630 (-)8.771e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)3.263e-16
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.302e-14
Glyma.03G045400 hypothetical protein AT5G01710:AT5G01710:methyltransferase 1Chr03:5760642–5763461 (-)8.693e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.928e-15
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)9.533e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)9.756e-11
Glyma.04G234900 hypothetical protein AT5G53000:TAP46:2A phosphatase associated protein of 46 kD 1Chr04:50332008–50336222 (-)4.414e-11
Glyma.05G034000 hypothetical protein AT4G03400:DFL2:Auxin-responsive GH3 family protein 1Chr05:2965889–2971412 (-)2.883e-13
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.424e-12
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)2.01e-11
Glyma.05G149300 hypothetical protein AT2G03870:EMB2816:Small nuclear ribonucleoprotein family protein 1Chr05:34357418–34361032 (-)4.424e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.768e-16
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)1.135e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)1.135e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)3.135e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)3.135e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.484e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.484e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)7.285e-12
Glyma.08G188000 hypothetical protein AT1G22930:AT1G22930:T-complex protein 11 1Chr08:15072032–15079757 (-)2.222e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)4.457e-12
Glyma.09G056300 hypothetical protein NA 1Chr09:5059486–5068979 (+)1.322e-11
Glyma.09G056400 hypothetical protein NA 1Chr09:5080364–5088515 (-)8.646e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)2.043e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)6.672e-15
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)1.005e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)6.081e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)8.406e-19
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.745e-16
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)7.568e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)7.568e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)7.568e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)7.568e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)7.568e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)5.165e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)5.165e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)5.165e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)5.165e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.759e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.192e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 1Chr10:48805999–48811533 (-)2.135e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)9.948e-11
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)1.714e-11
Glyma.11G117500 hypothetical protein NA 1Chr11:8932743–8933846 (-)8.473e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)1.246e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.768e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.768e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.768e-11
Glyma.12G054500 hypothetical protein NA 1Chr12:3938604–3943724 (+)3.48e-12
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)3.251e-16
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)6.416e-14
Glyma.13G156200 hypothetical protein AT1G80710:DRS1:DROUGHT SENSITIVE 1 1Chr13:27115515–27118951 (+)7.808e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)8.848e-16
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)8.124e-12
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)8.124e-12
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)8.123e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)5.092e-14
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)6.306e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)6.306e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)6.306e-11
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.566e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)7.542e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.508e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.508e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.317e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.756e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)4.685e-14
Glyma.15G154600 hypothetical protein AT2G34900:IMB1:Transcription factor GTE6 1Chr15:12869005–12877308 (-)2.961e-12
Glyma.15G154800 hypothetical protein AT1G30840:PUP4:purine permease 4 1Chr15:12885652–12899379 (+)2.961e-12
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)1.019e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)6.964e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)6.078e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)7.598e-12
Glyma.16G189000 hypothetical protein NA 1Chr16:35160485–35167548 (-)9.06e-11
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)4.009e-11
Glyma.17G092800 hypothetical protein NA 1Chr17:7253511–7255621 (-)4.504e-11
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)3.87e-11
Glyma.18G099600 hypothetical protein AT4G27040:VPS22:EAP30/Vps36 family protein 1Chr18:10453308–10458891 (-)2.348e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)3.368e-11
Glyma.18G099900 hypothetical protein AT1G47578:AT1G47578:Biotin/lipoate A/B protein ligase family__AT4G31050:AT4G31050:Biotin/lipoate A/B protein ligase fam… 1Chr18:10471443–10475076 (+)2.348e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)2.019e-11
Glyma.18G243800 Tic20-II AT2G47840:Tic20-II:putative conserved protein ycf60 1Chr18:53176043–53177130 (+)1.062e-12
Glyma.18G244400 hypothetical protein AT3G03330:AT3G03330:NAD(P)-binding Rossmann-fold superfamily protein 1Chr18:53211659–53216296 (+)8.33e-13
Glyma.18G257800 hypothetical protein NA 1Chr18:54346048–54349189 (+)2.999e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)1.662e-12
Glyma.18G268000 hypothetical protein NA 1Chr18:55205656–55213313 (-)6.335e-13
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)6.317e-12
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 1Chr19:1148510–1149495 (+)3.837e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.272e-17
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.272e-17
Glyma.19G026100 hypothetical protein NA 1Chr19:3271594–3272980 (-)7.087e-11
Glyma.19G195600 hypothetical protein AT3G52570:AT3G52570:alpha/beta-Hydrolases superfamily protein 1Chr19:45273343–45277374 (-)4.739e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)6.707e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.374e-19
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)9.561e-16