Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P36454

Metabolite ID
P36454
Deionized mass
585.7679 Da
Average m/z
586.7767
Average RT
18.1456
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
74
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

74 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G143700 hypothetical protein AT3G50830:COR413-PM2:cold-regulated 413-plasma membrane 2 5Chr16:30388030–30390647 (-)2.72e-15
Glyma.16G147900 hypothetical protein NA 4Chr16:30864919–30872425 (+)4.593e-12
Glyma.03G035500 hypothetical protein NA 2Chr03:4289118–4294184 (+)4.654e-14
Glyma.03G035800 hypothetical protein NA 2Chr03:4317466–4321009 (+)4.232e-12
Glyma.05G164700 hypothetical protein NA 2Chr05:35543931–35549196 (-)1.009e-16
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.345e-12
Glyma.16G138800 hypothetical protein NA 2Chr16:29609432–29615000 (+)8.331e-14
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 2Chr16:30086178–30091466 (-)7.031e-12
Glyma.16G144200 hypothetical protein AT3G50380:AT3G50380:vacuolar protein sorting-associated protein, putative (DUF1162) 2Chr16:30434508–30475458 (-)3.829e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 2Chr16:30514629–30519598 (+)6.947e-19
Glyma.16G145100 hypothetical protein NA 2Chr16:30578388–30581421 (-)1.46e-21
Glyma.16G146700 hypothetical protein NA 2Chr16:30755899–30759360 (-)5.844e-13
Glyma.16G147400 hypothetical protein NA 2Chr16:30817535–30821568 (+)1.344e-14
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)6.387e-13
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)4.514e-14
Glyma.03G036600 hypothetical protein NA 1Chr03:4432910–4435002 (-)9.547e-13
Glyma.03G036800 TBP1 AT3G13445:TBP1:TATA binding protein 1 1Chr03:4472672–4477787 (-)9.729e-11
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)7.014e-12
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)6.614e-11
Glyma.05G162400 hypothetical protein NA 1Chr05:35357223–35358831 (+)6.895e-12
Glyma.05G162500 hypothetical protein NA 1Chr05:35371190–35375992 (+)6.895e-12
Glyma.05G162600 hypothetical protein NA 1Chr05:35376373–35378991 (+)6.285e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.845e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.457e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.664e-14
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.007e-13
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)3.743e-12
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)9.063e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)9.063e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.845e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.845e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)6.833e-14
Glyma.13G170000 hypothetical protein AT3G01460:MBD9:methyl-CPG-binding domain 9 1Chr13:28401415–28416198 (-)1.625e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)1.722e-11
Glyma.13G201600 hypothetical protein NA 1Chr13:31521512–31522992 (+)1.795e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)7.322e-11
Glyma.14G176600 hypothetical protein NA 1Chr14:43565478–43570243 (+)6.45e-11
Glyma.15G070100 hypothetical protein AT1G61140:EDA16:SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 1Chr15:5355553–5364428 (+)3.58e-11
Glyma.15G071600 hypothetical protein AT4G21660:AT4G21660:proline-rich spliceosome-associated (PSP) family protein 1Chr15:5481672–5488866 (-)3.58e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.79e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)6.939e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.79e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.79e-11
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)2.381e-11
Glyma.16G057600 hypothetical protein AT3G27170:CLC-B:chloride channel B 1Chr16:5650591–5655830 (+)1.806e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)7.785e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.345e-12
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)4.05e-12
Glyma.16G134900 hypothetical protein AT5G66470:AT5G66470:GTP-binding protein Era-like protein 1Chr16:29214758–29219443 (-)7.9e-12
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)2.328e-12
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)4.302e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)4.323e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)3.803e-12
Glyma.16G140700 hypothetical protein NA 1Chr16:29846716–29852078 (-)5.932e-13
Glyma.16G140800 hypothetical protein AT3G50690:AT3G50690:Leucine-rich repeat (LRR) family protein 1Chr16:29854784–29858843 (-)3.625e-12
Glyma.16G141300 hypothetical protein AT4G36710:HAM4:GRAS family transcription factor 1Chr16:29937044–29939337 (+)1.089e-14
Glyma.16G141600 hypothetical protein AT5G66710:AT5G66710:Protein kinase superfamily protein__AT3G50720:AT3G50720:Protein kinase superfamily protein 1Chr16:29970884–29978773 (-)1.089e-14
Glyma.16G142800 hypothetical protein AT2G23760:BLH4:BEL1-like homeodomain 4 1Chr16:30201467–30210093 (+)2.354e-14
Glyma.16G143100 hypothetical protein AT2G23740:SUVR5:histone-lysine N-methyltransferase SUVR5 1Chr16:30245352–30261255 (-)2.354e-14
Glyma.16G143200 hypothetical protein AT5G66600:AT5G66600:electron transporter, putative (Protein of unknown function, DUF547) 1Chr16:30273151–30278680 (+)2.354e-14
Glyma.16G143600 hypothetical protein AT3G50820:PSBO2:photosystem II subunit O-2 1Chr16:30379885–30382483 (-)2.354e-14
Glyma.16G144100 hypothetical protein NA 1Chr16:30432951–30434052 (-)2.084e-18
Glyma.16G144300 hypothetical protein NA 1Chr16:30443185–30446450 (+)6.11e-12
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)1.072e-13
Glyma.16G144900 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr16:30549575–30553059 (+)7.371e-11
Glyma.16G145200 hypothetical protein NA 1Chr16:30586018–30588859 (-)3.347e-13
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.46e-21
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)5.845e-13
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)1.929e-19
Glyma.16G147500 hypothetical protein NA 1Chr16:30832490–30834904 (+)5.74e-12
Glyma.18G298600 hypothetical protein AT1G44960:AT1G44960:SNARE associated Golgi protein family 1Chr18:57614292–57617223 (+)6.859e-11
Glyma.18G299500 hypothetical protein AT2G43160:AT2G43160:ENTH/VHS family protein 1Chr18:57741567–57749794 (+)6.228e-11
Glyma.18G300500 hypothetical protein NA 1Chr18:57841316–57843280 (+)5.375e-11
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)5.051e-11