Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P35539

Metabolite ID
P35539
Deionized mass
486.0292 Da
Average m/z
487.0326
Average RT
17.8316
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
135
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

135 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.929e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)9.91e-13
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)2.004e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 3Chr16:30652378–30659548 (+)6.219e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.766e-11
Glyma.12G059300 hypothetical protein NA 2Chr12:4289989–4292215 (-)3.586e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)2.443e-14
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)2.158e-12
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.626e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)1.485e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)7.742e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.295e-12
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)2.231e-11
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)6.909e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)2.696e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)2.696e-13
Glyma.02G204500 hypothetical protein NA 1Chr02:38980978–38982630 (-)7.16e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)2.287e-13
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.739e-19
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)7.654e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.104e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.751e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.751e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.751e-11
Glyma.05G219200 hypothetical protein NA 1Chr05:39875137–39879113 (-)3.468e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)9.598e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.171e-14
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.456e-15
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.456e-15
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.456e-15
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)8.108e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)8.108e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)8.307e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)1.055e-11
Glyma.06G316500 hypothetical protein AT2G47420:DIM1A:Ribosomal RNA adenine dimethylase family protein 1Chr06:50531222–50538652 (-)3.765e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.953e-13
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)9.697e-12
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)4.607e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)4.607e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)1.593e-11
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)1.243e-11
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)1.243e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)8.092e-14
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)5.232e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.766e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.766e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.766e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.766e-11
Glyma.08G198800 hypothetical protein AT4G29990:AT4G29990:Leucine-rich repeat transmembrane protein kinase protein 1Chr08:16038744–16049943 (-)3.144e-11
Glyma.08G199200 hypothetical protein NA 1Chr08:16085918–16090408 (+)7.276e-11
Glyma.08G199700 hypothetical protein AT5G50340:AT5G50340:DNA repair protein RadA-like protein 1Chr08:16130591–16137703 (+)3.247e-12
Glyma.08G199800 hypothetical protein NA 1Chr08:16137933–16142956 (-)3.247e-12
Glyma.08G199900 hypothetical protein AT3G16480:MPPalpha:mitochondrial processing peptidase alpha subunit 1Chr08:16146033–16151741 (+)3.247e-12
Glyma.08G200200 hypothetical protein NA 1Chr08:16187816–16191151 (+)6.693e-14
Glyma.08G200500 hypothetical protein NA 1Chr08:16217120–16222339 (+)1.327e-12
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)9.555e-13
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)2.982e-12
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)5.021e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.856e-11
Glyma.09G110000 hypothetical protein NA 1Chr09:21593730–21602127 (+)1.838e-11
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.339e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)4.899e-12
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)3.285e-13
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)3.285e-13
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.54e-15
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.54e-15
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.54e-15
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.54e-15
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)7.498e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.532e-15
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)7.498e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)2.049e-15
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)6.419e-11
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)7.027e-11
Glyma.11G179000 hypothetical protein AT2G27230:LHW:transcription factor-like protein 1Chr11:24412040–24417199 (+)4.619e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)3.895e-11
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)8.117e-11
Glyma.12G008300 hypothetical protein AT3G21640:TWD1:FKBP-type peptidyl-prolyl cis-trans isomerase family protein 1Chr12:613939–617457 (+)5.134e-14
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.689e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.689e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.804e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.804e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)9.17e-11
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 1Chr12:36406747–36413696 (+)9.959e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.443e-14
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)7.615e-13
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)1.924e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)4.91e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)8.214e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.909e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)1.241e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.521e-14
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)2.227e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.626e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)3.754e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.778e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)7.102e-11
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)9.575e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)9.575e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.929e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.929e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.929e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.929e-11
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)6.794e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)6.103e-12
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.702e-13
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)2.004e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)2.004e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)2.674e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)1.095e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)2.507e-11
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.493e-12
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)6.091e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)7.264e-13
Glyma.16G142300 hypothetical protein AT4G36850:AT4G36850:PQ-loop repeat family protein / transmembrane family protein 1Chr16:30086178–30091466 (-)1.895e-11
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)3.747e-12
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)6.219e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)1.791e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)1.791e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)2.309e-13
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.57e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.57e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)4.273e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)1.485e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)9.181e-11
Glyma.18G259000 hypothetical protein NA 1Chr18:54442402–54446789 (-)2.337e-11
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)1.637e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)9.038e-13
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)2.459e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)2.459e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)9.558e-12
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.82e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.92e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.372e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)1.45e-11