Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34924

Metabolite ID
P34924
Deionized mass
303.1717 Da
Average m/z
304.1800
Average RT
17.5742
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
82
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

82 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)1.517e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.736e-15
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)1.861e-12
Glyma.16G210200 hypothetical protein NA 3Chr16:36933402–36938940 (+)4.154e-12
Glyma.01G126800 hypothetical protein NA 2Chr01:43602195–43612710 (+)4.654e-12
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)2.104e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)7.508e-14
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 2Chr09:46835469–46838091 (-)3.226e-17
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.306e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.306e-13
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.07e-14
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.736e-15
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)7.579e-11
Glyma.01G126900 hypothetical protein NA 1Chr01:43632082–43635399 (+)4.654e-12
Glyma.01G127400 hypothetical protein AT1G58170:AT1G58170:Disease resistance-responsive (dirigent-like protein) family protein__AT1G55210:AT1G55210:Disease r… 1Chr01:43890586–43892006 (+)9.984e-11
Glyma.01G168800 hypothetical protein AT1G24430:AT1G24430:HXXXD-type acyl-transferase family protein 1Chr01:50633986–50636589 (+)7.187e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.034e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.034e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.151e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.064e-17
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)1.219e-11
Glyma.05G149200 hypothetical protein NA 1Chr05:34347910–34353885 (-)4.051e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.457e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.235e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.011e-17
Glyma.06G145200 hypothetical protein AT2G40460:AT2G40460:Major facilitator superfamily protein 1Chr06:11831210–11841320 (+)9.78e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)7.543e-16
Glyma.07G013400 hypothetical protein AT3G21310:AT3G21310:Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein 1Chr07:1028243–1033837 (-)1.882e-11
Glyma.07G013500 hypothetical protein NA 1Chr07:1036819–1041984 (-)1.882e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.974e-11
Glyma.07G019900 hypothetical protein AT1G79870:AT1G79870:D-isomer specific 2-hydroxyacid dehydrogenase family protein 1Chr07:1561952–1564494 (+)8.34e-12
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)9.962e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)7.508e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)7.508e-14
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)7.508e-14
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)7.508e-14
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)9.098e-12
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)9.813e-12
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)6.708e-14
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)1.241e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)1.268e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)1.268e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)4.87e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.115e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)1.508e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)1.508e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)1.508e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)1.508e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)7.539e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.115e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.115e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.063e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.063e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.595e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)6.064e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)6.064e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.861e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)9.388e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)3.254e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)3.254e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)6.306e-13
Glyma.14G068100 hypothetical protein AT3G12550:FDM3:XH/XS domain-containing protein 1Chr14:5701618–5711043 (-)4.093e-14
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.793e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.179e-12
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.793e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.793e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)8.609e-16
Glyma.15G139000 hypothetical protein NA 1Chr15:11314329–11317181 (-)2.893e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)9.509e-11
Glyma.16G182600 hypothetical protein AT5G52400:CYP715A1:cytochrome P450, family 715, subfamily A, polypeptide 1 1Chr16:34364037–34367765 (-)1.797e-12
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)1.246e-12
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)1.489e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)6.128e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)1.936e-11
Glyma.16G209900 hypothetical protein NA 1Chr16:36919141–36924601 (+)4.154e-12
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)4.395e-14
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)4.395e-14
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)7.741e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.59e-14
Glyma.20G101700 hypothetical protein AT5G08580:AT5G08580:Calcium-binding EF hand family protein 1Chr20:34467936–34475476 (-)2.06e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)8.433e-11
Glyma.20G211500 hypothetical protein AT3G63410:APG1:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr20:44820994–44827443 (+)4.615e-12