Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34479

Metabolite ID
P34479
Deionized mass
482.1605 Da
Average m/z
483.1685
Average RT
17.4311
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
61
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

61 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 4Chr16:36856833–36863994 (-)4.243e-13
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 3Chr03:2240686–2246512 (-)2.317e-11
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 2Chr08:9065033–9071774 (-)9.236e-13
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)7.129e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 2Chr08:9198213–9201688 (-)8.634e-14
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)2.124e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)2.124e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)2.974e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)4.25e-13
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)4.25e-13
Glyma.02G107400 hypothetical protein NA 1Chr02:10245905–10246706 (-)6.768e-11
Glyma.02G121500 hypothetical protein NA 1Chr02:12065640–12082937 (+)4.771e-11
Glyma.02G121600 hypothetical protein AT1G26310:CAL:K-box region and MADS-box transcription factor family protein 1Chr02:12084714–12089043 (+)4.771e-11
Glyma.03G015500 hypothetical protein NA 1Chr03:1536239–1539653 (+)6.41e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)7.875e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.909e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.163e-13
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.312e-11
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)2.865e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.188e-11
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)2.865e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)2.865e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.188e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.777e-12
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.082e-11
Glyma.08G117400 hypothetical protein AT4G18750:DOT4:Pentatricopeptide repeat (PPR) superfamily protein 1Chr08:9054060–9063297 (+)6.013e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)9.236e-13
Glyma.08G118500 hypothetical protein NA 1Chr08:9161382–9162471 (+)5.49e-13
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.36e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)2.124e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)2.124e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)2.124e-12
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)2.919e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.086e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.086e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.496e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.312e-11
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)9.089e-11
Glyma.11G161900 hypothetical protein NA 1Chr11:14992307–14994409 (-)8.245e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)4.856e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)9.815e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)9.815e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.915e-12
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)3.015e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)6.211e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.47e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)9.443e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.446e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.637e-11
Glyma.16G138900 hypothetical protein NA 1Chr16:29620531–29621995 (+)5.082e-12
Glyma.16G139100 hypothetical protein NA 1Chr16:29632332–29634248 (-)4.843e-11
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)4.89e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.155e-12
Glyma.18G050100 hypothetical protein NA 1Chr18:4323734–4329696 (+)2.035e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)9.066e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)9.503e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)4.53e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)4.53e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.748e-12
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.625e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.017e-13