Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34323

Metabolite ID
P34323
Deionized mass
258.1842 Da
Average m/z
259.1899
Average RT
17.3677
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 2Chr06:10709045–10716245 (-)4.799e-13
Glyma.09G060000 hypothetical protein NA 2Chr09:5548206–5554279 (-)1.938e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)2.477e-16
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)2.909e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)2.909e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)2.909e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)1.973e-12
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)3.076e-11
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)2.655e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)2.655e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)2.655e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)2.655e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)2.655e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)2.655e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)2.655e-11
Glyma.02G151500 hypothetical protein AT2G47990:SWA1:transducin family protein / WD-40 repeat family protein 1Chr02:15586732–15588774 (+)1.781e-11
Glyma.02G176800 hypothetical protein AT5G06839:TGA10:bZIP transcription factor family protein 1Chr02:29019977–29028838 (-)2.983e-11
Glyma.02G193800 hypothetical protein AT5G06470:AT5G06470:Glutaredoxin family protein 1Chr02:36706657–36712744 (-)1.64e-12
Glyma.02G287700 hypothetical protein AT3G58780:SHP1:K-box region and MADS-box transcription factor family protein__AT2G42830:SHP2:K-box region and MADS-box … 1Chr02:46797935–46805223 (-)4.474e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)6.247e-11
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 1Chr03:5113019–5121557 (+)1.781e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)3.191e-16
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.755e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.326e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.326e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)4.69e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.268e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.268e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.268e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)5.449e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)9.648e-18
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)4.673e-14
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)7.074e-12
Glyma.06G134900 hypothetical protein AT4G27670:HSP21:heat shock protein 21 1Chr06:11083841–11088991 (+)1.025e-11
Glyma.06G135100 hypothetical protein NA 1Chr06:11096995–11099852 (+)6.108e-11
Glyma.06G135300 hypothetical protein NA 1Chr06:11125203–11130757 (-)4.752e-11
Glyma.06G135400 hypothetical protein NA 1Chr06:11125473–11126625 (+)4.752e-11
Glyma.06G209300 hypothetical protein NA 1Chr06:20573671–20581076 (-)4.274e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)7.054e-12
Glyma.08G150100 hypothetical protein AT2G44450:BGLU15:beta glucosidase 15 1Chr08:11525692–11536927 (+)6.043e-11
Glyma.09G057400 hypothetical protein AT5G57320:VLN5:actin filament bundling protein P-115-ABP protein 1Chr09:5173554–5193820 (-)6.038e-11
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)7.34e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)1.462e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)1.462e-11
Glyma.09G060100 hypothetical protein AT5G57160:ATLIG4:DNA ligase IV 1Chr09:5561072–5570789 (+)1.938e-11
Glyma.09G062200 hypothetical protein AT2G19350:AT2G19350:transmembrane protein (DUF872) 1Chr09:5901280–5902349 (+)6.47e-11
Glyma.09G062900 hypothetical protein NA 1Chr09:6004419–6011041 (+)2.151e-14
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.323e-12
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)8.472e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)2.909e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)2.909e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)2.909e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)6.566e-12
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)2.909e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)2.909e-11
Glyma.10G265400 hypothetical protein AT2G01290:RPI2: 1Chr10:48921268–48922795 (+)2.681e-11
Glyma.11G224000 hypothetical protein NA 1Chr11:31892279–31894201 (-)5.468e-12
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.944e-11
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.944e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.944e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)5.048e-12
Glyma.13G163400 hypothetical protein AT5G20350:TIP1:Ankyrin repeat family protein with DHHC zinc finger domain-containing protein 1Chr13:27861309–27869162 (+)1.038e-11
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)4.682e-13
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)4.682e-13
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)4.682e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)2.934e-13
Glyma.13G204200 hypothetical protein NA 1Chr13:31822330–31826011 (+)4.629e-13
Glyma.13G204700 hypothetical protein AT1G11720:SS3:starch synthase 3 1Chr13:31872482–31883107 (-)3.805e-11
Glyma.13G204800 hypothetical protein AT4G04640:ATPC1:ATPase, F1 complex, gamma subunit protein 1Chr13:31885462–31887911 (-)3.805e-11
Glyma.13G204900 hypothetical protein AT1G64570:DUO3:Homeodomain-like superfamily protein 1Chr13:31888324–31898942 (-)3.805e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)1.841e-11
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 1Chr14:5675792–5680343 (+)3.675e-12
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)3.559e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)3.081e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 1Chr18:57674222–57678396 (+)1.187e-12
Glyma.19G120200 hypothetical protein NA 1Chr19:37773951–37778723 (+)7.781e-11
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)9.912e-11
Glyma.20G025700 hypothetical protein AT1G13820:AT1G13820:alpha/beta-Hydrolases superfamily protein 1Chr20:2813089–2825575 (+)5.718e-11