Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P34025

Metabolite ID
P34025
Deionized mass
470.1440 Da
Average m/z
471.1498
Average RT
17.2546
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
78
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

78 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.08G123500 hypothetical protein NA 3Chr08:9494946–9505931 (-)7.695e-14
Glyma.03G001500 B15-3-5 AT2G38600:AT2G38600:HAD superfamily, subfamily IIIB acid phosphatase 2Chr03:169480–172727 (+)4.546e-11
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)3.704e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 2Chr12:36267599–36271584 (+)2.441e-12
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)6.414e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)6.414e-13
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)2.315e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.824e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.824e-12
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 1Chr02:693193–700260 (+)2.226e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)3.911e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)8.743e-11
Glyma.04G063900 hypothetical protein NA 1Chr04:5310107–5313853 (+)1.368e-11
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)2.192e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.607e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.42e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)8.153e-11
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)8.911e-11
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)8.911e-11
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)8.911e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)8.911e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.928e-15
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.865e-15
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.016e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)4.46e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)4.46e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)3.704e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)4.46e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)1.412e-12
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)1.363e-11
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)1.363e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.077e-11
Glyma.09G275500 hypothetical protein NA 1Chr09:49105837–49106989 (+)2.847e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)5.077e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)8.758e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)8.758e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)5.679e-11
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)5.679e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)5.221e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.441e-12
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)5.462e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)4.916e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)4.916e-11
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)6.414e-13
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)6.414e-13
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)5.629e-11
Glyma.13G200600 hypothetical protein AT1G64830:AT1G64830:Eukaryotic aspartyl protease family protein 1Chr13:31428112–31429431 (-)4.884e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.095e-13
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)4.657e-12
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)1.151e-12
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)1.151e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.407e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.727e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.97e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.108e-14
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.97e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.97e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)7.969e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)1.907e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)7.309e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)6.333e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.902e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.379e-11
Glyma.16G144600 hypothetical protein NA 1Chr16:30501031–30506501 (+)1.275e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)2.125e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)2.132e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)2.132e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)3.113e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.389e-12
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)2.272e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)2.272e-11
Glyma.16G196900 hypothetical protein NA 1Chr16:35841279–35846894 (-)3.047e-12
Glyma.16G209300 hypothetical protein NA 1Chr16:36856833–36863994 (-)7.482e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.072e-11
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.072e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.933e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.064e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)6.801e-14