Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33625

Metabolite ID
P33625
Deionized mass
309.2723 Da
Average m/z
310.2792
Average RT
17.0902
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
95
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

95 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 3Chr16:36856833–36863994 (-)7.676e-12
Glyma.17G218600 hypothetical protein NA 3Chr17:36975400–36982812 (-)6.789e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)1.663e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.399e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)3.044e-13
Glyma.14G149300 hypothetical protein NA 2Chr14:32235308–32258014 (+)9.217e-13
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)7.918e-11
Glyma.17G216700 hypothetical protein AT4G31930:AT4G31930:Mitochondrial glycoprotein family protein 2Chr17:36510062–36519347 (+)6.714e-12
Glyma.18G196200 hypothetical protein AT3G09100:AT3G09100:mRNA capping enzyme family protein 2Chr18:47102746–47129707 (+)6.14e-11
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)1.696e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)8.272e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)5.146e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)6.573e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.814e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)8.576e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)6.937e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)4.185e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)9.165e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)7.323e-13
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.122e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)2.556e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.927e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.244e-13
Glyma.06G078400 hypothetical protein AT4G31290:AT4G31290:ChaC-like family protein 1Chr06:6068728–6071360 (+)4.77e-11
Glyma.06G079400 hypothetical protein NA 1Chr06:6105463–6107101 (+)9.652e-12
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)6.177e-12
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)7.261e-11
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)7.261e-11
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)1.218e-11
Glyma.06G130300 hypothetical protein AT5G53080:AT5G53080:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr06:10709045–10716245 (-)8.969e-11
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)2.224e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)8.391e-11
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)6.347e-11
Glyma.07G071800 hypothetical protein AT4G20960:PyrD:Cytidine/deoxycytidylate deaminase family protein 1Chr07:6523253–6526707 (+)8.985e-12
Glyma.07G078300 hypothetical protein NA 1Chr07:7150800–7154478 (-)5.648e-11
Glyma.08G104600 hypothetical protein AT1G27930:AT1G27930:glucuronoxylan 4-O-methyltransferase-like protein (DUF579) 1Chr08:8045602–8047222 (-)9.325e-11
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)2.701e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)2.701e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)6.751e-12
Glyma.08G117500 hypothetical protein AT4G18780:IRX1:cellulose synthase family protein 1Chr08:9065033–9071774 (-)7.873e-11
Glyma.08G118400 hypothetical protein AT4G18810:AT4G18810:NAD(P)-binding Rossmann-fold superfamily protein 1Chr08:9147404–9153858 (-)7.873e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)1.399e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)1.399e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.399e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.399e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)1.155e-11
Glyma.09G251800 hypothetical protein AT1G65380:CLV2:Leucine-rich repeat (LRR) family protein 1Chr09:47220796–47224266 (+)7.891e-13
Glyma.09G252000 hypothetical protein AT2G40730:CTEXP:kinase family with ARM repeat domain-containing protein 1Chr09:47233101–47242848 (+)1.132e-11
Glyma.09G252300 hypothetical protein AT5G16520:AT5G16520:uncharacterized protein 1Chr09:47254519–47261787 (-)1.132e-11
Glyma.10G028500 hypothetical protein NA 1Chr10:2476846–2478953 (+)4.416e-12
Glyma.10G028700 hypothetical protein AT1G03090:MCCA:methylcrotonyl-CoA carboxylase alpha chain 1Chr10:2485817–2497071 (-)4.416e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.684e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.605e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)9.253e-11
Glyma.11G237700 hypothetical protein NA 1Chr11:33203513–33233708 (-)1.299e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)6.528e-11
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)1.327e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)4.043e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)5.405e-11
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)6.581e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.36e-15
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)2.086e-13
Glyma.14G148800 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr14:32154755–32157298 (+)9.217e-13
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)3.671e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)3.671e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)8.511e-13
Glyma.14G211800 hypothetical protein AT1G66080:AT1G66080:hikeshi-like protein 1Chr14:47664851–47670630 (+)5.995e-12
Glyma.14G211900 hypothetical protein AT5G16560:KAN:Homeodomain-like superfamily protein 1Chr14:47690466–47697203 (+)6.443e-11
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)7.566e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)6.451e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)9.527e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)6.451e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)6.451e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.008e-13
Glyma.15G172900 hypothetical protein AT5G57070:AT5G57070:hydroxyproline-rich glycoprotein family protein 1Chr15:15847563–15849835 (+)3.767e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.786e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.703e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)1.896e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)7.602e-12
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)7.602e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)9.618e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)9.618e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.002e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)7.918e-11
Glyma.17G218700 hypothetical protein NA 1Chr17:36986191–36991558 (-)6.789e-11
Glyma.18G106600 hypothetical protein NA 1Chr18:11947553–11951868 (+)2.633e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)1.299e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)3.022e-14
Glyma.18G231300 hypothetical protein AT3G61310:AT3G61310:AT hook motif DNA-binding family protein 1Chr18:51979095–51987062 (-)5.277e-11
Glyma.18G231500 hypothetical protein NA 1Chr18:52019138–52019828 (-)2.47e-12
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)2.369e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)5.231e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)5.231e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)9.17e-11
Glyma.20G110000 hypothetical protein AT3G54260:TBL36:TRICHOME BIREFRINGENCE-LIKE 36 1Chr20:35229423–35231861 (+)4.354e-11