Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33592

Metabolite ID
P33592
Deionized mass
521.2494 Da
Average m/z
522.2539
Average RT
17.0673
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
144
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

144 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)1.324e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 4Chr16:35831912–35835153 (+)7.645e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)6.525e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)3.929e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)9.063e-11
Glyma.02G006500 hypothetical protein AT4G01660:ABC1:ABC transporter 1 2Chr02:693193–700260 (+)6.722e-19
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)5.115e-12
Glyma.11G145000 hypothetical protein AT4G27490:RRP41L:3'-5'-exoribonuclease family protein 2Chr11:11117760–11123162 (+)2.113e-11
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 2Chr12:35879106–35881779 (+)4.26e-11
Glyma.13G051000 hypothetical protein AT1G19920:APS2:Pseudouridine synthase/archaeosine transglycosylase-like family protein 2Chr13:14742455–14747878 (-)4.202e-13
Glyma.16G121500 hypothetical protein NA 2Chr16:27007186–27010856 (+)2.335e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.437e-13
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)6.525e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)5.878e-12
Glyma.01G045600 hypothetical protein NA 1Chr01:5242432–5245038 (-)5.166e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.212e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.212e-12
Glyma.01G173900 hypothetical protein NA 1Chr01:51092004–51094319 (+)2.511e-12
Glyma.01G174300 hypothetical protein NA 1Chr01:51115502–51120201 (+)9.088e-11
Glyma.01G174600 hypothetical protein AT5G66740:AT5G66740:spindle assembly abnormal protein (DUF620) 1Chr01:51138854–51141103 (+)9.088e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)4.245e-13
Glyma.02G088200 hypothetical protein AT1G64680:AT1G64680:beta-carotene isomerase D27 1Chr02:7717452–7725490 (+)2.947e-12
Glyma.02G126300 hypothetical protein NA 1Chr02:12670653–12677305 (+)1.316e-11
Glyma.02G126400 hypothetical protein NA 1Chr02:12678071–12683492 (+)1.316e-11
Glyma.02G126800 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein__AT3G25540:LAG1:TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain co… 1Chr02:12771578–12777488 (+)1.316e-11
Glyma.02G127000 hypothetical protein AT1G13580:LAG13:LAG1 longevity assurance-like protein 1Chr02:12798511–12806795 (+)9.596e-11
Glyma.02G127400 hypothetical protein AT1G26190:AT1G26190:Phosphoribulokinase / Uridine kinase family 1Chr02:12849745–12869066 (+)1.316e-11
Glyma.02G127600 hypothetical protein NA 1Chr02:12976382–12983547 (+)1.316e-11
Glyma.02G129200 hypothetical protein AT1G26160:AT1G26160:Metal-dependent phosphohydrolase 1Chr02:13217893–13226292 (+)4.226e-11
Glyma.02G130200 hypothetical protein AT1G68740:PHO1;H1:EXS (ERD1/XPR1/SYG1) family protein 1Chr02:13340016–13346701 (-)4.226e-11
Glyma.02G130700 hypothetical protein AT1G68750:PPC4:phosphoenolpyruvate carboxylase 4 1Chr02:13470428–13489647 (-)4.226e-11
Glyma.02G131600 hypothetical protein AT4G34020:DJ1C:Class I glutamine amidotransferase-like superfamily protein 1Chr02:13577916–13581914 (+)4.226e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)5.641e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.296e-13
Glyma.03G035400 hypothetical protein AT3G42630:AT3G42630:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:4282985–4285957 (-)4.042e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.419e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)4.334e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)5.815e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)6.085e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)6.549e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)6.549e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)6.549e-11
Glyma.05G188500 hypothetical protein AT3G27740:CARA:carbamoyl phosphate synthetase A 1Chr05:37445235–37448125 (+)3.154e-12
Glyma.05G191600 hypothetical protein AT2G13680:CALS5:callose synthase 5 1Chr05:37711639–37726572 (-)7.672e-12
Glyma.05G195400 hypothetical protein AT5G08740:NDC1:NAD(P)H dehydrogenase C1 1Chr05:37969923–37975033 (+)7.167e-12
Glyma.05G223100 hypothetical protein AT2G19680:AT2G19680:Mitochondrial ATP synthase subunit G protein 1Chr05:40259388–40262641 (+)6.147e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.015e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.332e-11
Glyma.05G232400 hypothetical protein AT3G24440:VRN5:Fibronectin type III domain-containing protein 1Chr05:40992124–41003814 (+)1.866e-15
Glyma.05G232600 hypothetical protein AT4G13360:AT4G13360:ATP-dependent caseinolytic (Clp) protease/crotonase family protein__AT3G24360:AT3G24360:ATP-depende… 1Chr05:41009642–41015826 (+)2.104e-15
Glyma.05G232800 hypothetical protein AT3G18500:AT3G18500:DNAse I-like superfamily protein 1Chr05:41022747–41030067 (-)2.104e-15
Glyma.05G233100 hypothetical protein NA 1Chr05:41041130–41048359 (-)2.104e-15
Glyma.05G233300 hypothetical protein AT1G18420:AT1G18420:aluminum activated malate transporter family protein__AT3G18440:ALMT9:aluminum-activated malate tra… 1Chr05:41054304–41057812 (-)5.782e-11
Glyma.05G233400 ALMT9 aluminum-activated malate transporter 9 AT3G18440:ALMT9:aluminum-activated malate transporter 9 1Chr05:41058365–41063472 (-)2.104e-15
Glyma.05G233500 hypothetical protein NA 1Chr05:41066769–41067350 (-)3.454e-12
Glyma.05G233700 COL11 zinc finger protein CONSTANS-LIKE 16-like AT1G68520:BBX14:B-box type zinc finger protein with CCT domain-containing protein 1Chr05:41087671–41089500 (+)1.773e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)8.122e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.421e-19
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.251e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.042e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.251e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.251e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.042e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)3.216e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.865e-11
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)1.591e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)2.653e-11
Glyma.07G018100 hypothetical protein NA 1Chr07:1442368–1445430 (-)3.597e-11
Glyma.07G018300 hypothetical protein AT3G27750:EMB3123:PPR containing protein 1Chr07:1457706–1458428 (+)3.596e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)9.033e-12
Glyma.08G109000 SUB1 NA 1Chr08:8364770–8373803 (-)1.491e-11
Glyma.08G110000 hypothetical protein AT3G23840:AT3G23840:HXXXD-type acyl-transferase family protein 1Chr08:8438346–8442806 (-)1.491e-11
Glyma.08G110200 hypothetical protein NA 1Chr08:8471393–8473156 (+)6.512e-11
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.244e-11
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)2.266e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)6.762e-12
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)4.242e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)4.242e-11
Glyma.08G204800 hypothetical protein AT3G16140:PSAH-1:photosystem I subunit H-1 1Chr08:16601039–16602646 (+)8.963e-12
Glyma.09G012200 hypothetical protein AT2G35760:AT2G35760:Uncharacterized protein family (UPF0497) 1Chr09:937048–940244 (+)5.807e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)1.084e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)7.1e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)6.181e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)2.295e-11
Glyma.09G268900 hypothetical protein NA 1Chr09:48638803–48644136 (+)8.968e-11
Glyma.10G055100 hypothetical protein AT1G33410:SAR1:SUPPRESSOR OF AUXIN RESISTANCE1 1Chr10:5015329–5032990 (+)8.272e-11
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)2.069e-11
Glyma.11G144800 hypothetical protein AT2G28250:NCRK:Protein kinase superfamily protein 1Chr11:11096950–11105343 (+)2.113e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)3.169e-14
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)3.169e-14
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.491e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.491e-14
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)3.187e-11
Glyma.12G186300 hypothetical protein NA 1Chr12:34717587–34719271 (+)3.587e-11
Glyma.12G186400 hypothetical protein AT5G22350:ELM1:fission ELM1-like protein (DUF1022) 1Chr12:34720712–34724838 (+)3.587e-11
Glyma.12G196800 hypothetical protein AT4G15180:SDG2:SET domain protein 2 1Chr12:35784957–35801339 (+)4.26e-11
Glyma.12G197500 hypothetical protein NA 1Chr12:35869162–35874097 (+)4.26e-11
Glyma.12G197800 hypothetical protein NA 1Chr12:35892655–35896825 (-)4.26e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.628e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.628e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.201e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.201e-12
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)7.953e-11
Glyma.13G050500 hypothetical protein NA 1Chr13:14674243–14683099 (-)1.182e-12
Glyma.13G052100 hypothetical protein NA 1Chr13:14902730–14924713 (-)7.051e-11
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 1Chr13:24677399–24693129 (-)2.941e-12
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.941e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)5.774e-12
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)5.774e-12
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)5.774e-12
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)5.774e-12
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)8.645e-11
Glyma.14G071600 hypothetical protein AT1G27620:AT1G27620:HXXXD-type acyl-transferase family protein 1Chr14:6016839–6019954 (+)2.29e-13
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.778e-14
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.778e-14
Glyma.14G082300 hypothetical protein AT5G42750:BKI1:BRI1 kinase inhibitor 1 1Chr14:7130733–7132305 (+)6.646e-12
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.778e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.238e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.151e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.238e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.238e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.172e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.979e-13
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)2.702e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.034e-11
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)9.063e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)9.063e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)5.99e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)2.323e-12
Glyma.16G121400 hypothetical protein NA 1Chr16:26989007–26992349 (+)4.022e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)5.804e-12
Glyma.16G196400 hypothetical protein AT5G07270:XBAT33:uncharacterized protein 1Chr16:35782198–35790495 (-)2.38e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)2.308e-12
Glyma.18G052100 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr18:4503897–4512049 (+)3.562e-13
Glyma.19G009400 hypothetical protein AT5G40270:AT5G40270:HD domain-containing metal-dependent phosphohydrolase family protein 1Chr19:885045–893253 (+)4.788e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.184e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.184e-12
Glyma.19G022500 hypothetical protein AT5G15230:GASA4:GAST1 protein homolog 4 1Chr19:2574642–2577346 (+)4.26e-11
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.629e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.991e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.659e-13
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)4.873e-12
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)1.455e-11
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)3.706e-13