Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33516

Metabolite ID
P33516
Deionized mass
246.0379 Da
Average m/z
247.0455
Average RT
17.0496
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
148
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

148 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G209300 hypothetical protein NA 5Chr16:36856833–36863994 (-)2.011e-13
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)1.642e-12
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)8.97e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)5.863e-12
Glyma.06G183500 hypothetical protein AT5G50000:AT5G50000:Protein kinase superfamily protein 2Chr06:15828917–15834067 (+)4.822e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)4.665e-11
Glyma.12G212300 hypothetical protein AT3G58710:WRKY69:WRKY DNA-binding protein 69 2Chr12:37131153–37134096 (+)2.23e-13
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)1.544e-11
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)1.544e-11
Glyma.18G299100 hypothetical protein AT5G13420:TRA2:Aldolase-type TIM barrel family protein 2Chr18:57674222–57678396 (+)3.928e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)8.97e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)6.157e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)6.157e-12
Glyma.02G061700 hypothetical protein AT2G23450:AT2G23450:Protein kinase superfamily protein 1Chr02:5577271–5582873 (-)2.866e-11
Glyma.02G062600 hypothetical protein AT2G23540:AT2G23540:GDSL-like Lipase/Acylhydrolase superfamily protein 1Chr02:5645621–5648965 (+)4.624e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)9.771e-11
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)3.562e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.957e-16
Glyma.03G124500 hypothetical protein NA 1Chr03:33758928–33762195 (+)3.16e-12
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)2.505e-12
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)1.989e-11
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)7.885e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.912e-11
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)3.919e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)3.919e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)3.919e-11
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)8.875e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.119e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)2.256e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.383e-13
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.655e-18
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)1.051e-14
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)8.597e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.262e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.262e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.262e-11
Glyma.06G118500 hypothetical protein NA 1Chr06:9644661–9650144 (-)2.844e-11
Glyma.06G118800 hypothetical protein NA 1Chr06:9666921–9667708 (+)2.844e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.43e-15
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.43e-15
Glyma.06G275900 hypothetical protein NA 1Chr06:46685943–46689788 (-)4.732e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)1.356e-13
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)2.078e-14
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)1.356e-13
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)1.355e-13
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)2.078e-14
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)7.536e-13
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)6.639e-13
Glyma.06G313500 hypothetical protein NA 1Chr06:50191600–50203098 (-)3.689e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)7.436e-11
Glyma.07G040200 hypothetical protein NA 1Chr07:3324393–3329481 (-)1.054e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.569e-17
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.452e-14
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)1.591e-11
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)6.3e-12
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.593e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)6.063e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.185e-11
Glyma.09G238200 NIP2-1 putative Si transporter NIP2-1 NA 1Chr09:46029192–46034136 (+)1.992e-12
Glyma.09G238800 hypothetical protein AT3G28910:MYB30:myb domain protein 30 1Chr09:46114284–46116303 (-)4.594e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)9.308e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.21e-17
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.21e-17
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.21e-17
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.21e-17
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)1.029e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.988e-18
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)1.029e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.501e-12
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)9.253e-13
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)1.552e-11
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)5.143e-11
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)5.143e-11
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)5.143e-11
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)5.143e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)1.555e-11
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)1.15e-12
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)4.14e-17
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)4.14e-17
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)4.14e-17
Glyma.12G049300 hypothetical protein NA 1Chr12:3538428–3539170 (-)2.755e-13
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)4.302e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)4.3e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)4.599e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)4.599e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.1e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.009e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.141e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)1.141e-11
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)4.256e-11
Glyma.12G212500 hypothetical protein NA 1Chr12:37150677–37158587 (+)4.883e-11
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)3.374e-12
Glyma.12G213100 hypothetical protein AT3G20560:PDIL5-3:PDI-like 5-3__AT4G27080:PDIL5-4:PDI-like 5-4 1Chr12:37207799–37215685 (+)3.523e-11
Glyma.12G228300 hypothetical protein AT3G15030:TCP4:TCP family transcription factor 4 1Chr12:38813527–38816237 (-)2.375e-14
Glyma.13G095000 hypothetical protein NA 1Chr13:21005327–21006774 (-)2.294e-12
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)1.479e-11
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)5.863e-12
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.544e-11
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.544e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)2.927e-11
Glyma.13G161900 PAP25 purple acid phosphatase AT5G34850:PAP26:purple acid phosphatase 26 1Chr13:27748190–27752685 (-)1.658e-11
Glyma.14G190100 hypothetical protein AT2G04280:AT2G04280:calcium ion-binding protein 1Chr14:45502008–45504459 (+)5.678e-12
Glyma.14G191400 hypothetical protein NA 1Chr14:45610980–45612600 (+)7.113e-12
Glyma.14G198100 hypothetical protein NA 1Chr14:46337677–46340654 (+)5.719e-12
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)1.596e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)1.596e-11
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)3.127e-11
Glyma.15G009700 hypothetical protein NA 1Chr15:751766–753795 (+)4.441e-11
Glyma.15G009800 hypothetical protein NA 1Chr15:753771–758859 (-)4.76e-15
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.574e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)5.519e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.574e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.574e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.654e-12
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)3.276e-15
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.08e-11
Glyma.15G256300 hypothetical protein NA 1Chr15:48546007–48547401 (-)1.072e-13
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)9.103e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)5.722e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.642e-12
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)8.019e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)6.077e-12
Glyma.16G140600 hypothetical protein NA 1Chr16:29836830–29839178 (+)1.496e-11
Glyma.16G141500 bZIP117 AT4G36730:GBF1:G-box binding factor 1 1Chr16:29960697–29967081 (-)7.011e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)9.713e-11
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)9.713e-11
Glyma.16G157200 hypothetical protein AT1G71850:AT1G71850:Ubiquitin carboxyl-terminal hydrolase family protein 1Chr16:31774664–31777363 (+)3.583e-11
Glyma.16G158300 hypothetical protein AT5G43140:AT5G43140:Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 1Chr16:31859405–31862567 (+)6.018e-11
Glyma.16G158400 hypothetical protein AT5G48100:TT10:Laccase/Diphenol oxidase family protein 1Chr16:31863760–31867327 (-)6.018e-11
Glyma.16G161500 hypothetical protein NA 1Chr16:32076715–32092322 (-)6.311e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)4.809e-13
Glyma.16G207900 hypothetical protein AT5G08450:AT5G08450:zinc finger CCCH domain protein 1Chr16:36754888–36763450 (+)6.948e-11
Glyma.16G208500 EIF6 AT3G55620:eIF6A:Translation initiation factor IF6 1Chr16:36806718–36809299 (+)2.657e-13
Glyma.16G209000 hypothetical protein NA 1Chr16:36841786–36845498 (-)5.425e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)8.396e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)8.396e-11
Glyma.17G121800 hypothetical protein AT1G73965:CLE13:CLAVATA3/ESR-RELATED 13 1Chr17:9746590–9748712 (+)3.76e-12
Glyma.18G055400 hypothetical protein NA 1Chr18:4824726–4828902 (+)7.958e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)3.029e-11
Glyma.18G230700 hypothetical protein AT3G61290:AT3G61290:O-glucosyltransferase rumi-like protein (DUF821) 1Chr18:51943730–51947645 (+)2.043e-13
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)8.667e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)2.303e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)1.963e-13
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)1.963e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.74e-12
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)7.937e-11
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)1.487e-11
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.971e-11