Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33509

Metabolite ID
P33509
Deionized mass
250.0469 Da
Average m/z
251.0549
Average RT
17.0484
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
132
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

132 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)9.623e-11
Glyma.10G081700 hypothetical protein NA 3Chr10:9752508–9758422 (+)4.975e-25
Glyma.14G067800 hypothetical protein AT3G12380:ARP5:actin-related protein 5 2Chr14:5675792–5680343 (+)5.152e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)1.528e-11
Glyma.16G031600 hypothetical protein NA 2Chr16:2964569–2985013 (+)5.485e-12
Glyma.16G196900 hypothetical protein NA 2Chr16:35841279–35846894 (-)6.45e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)4.308e-11
Glyma.18G259000 hypothetical protein NA 2Chr18:54442402–54446789 (-)1.41e-12
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1134716–1143232 (+)3.552e-11
Glyma.01G119600 SLE3 AT2G40170:GEA6:Stress induced protein 1Chr01:41172520–41174209 (-)2.489e-12
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)3.707e-14
Glyma.01G121400 hypothetical protein AT5G01400:ESP4:HEAT repeat-containing protein 1Chr01:41808055–41828625 (-)3.528e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)7.522e-13
Glyma.01G124100 hypothetical protein NA 1Chr01:42886229–42892204 (-)2.237e-12
Glyma.01G124800 hypothetical protein AT2G38320:TBL34:TRICHOME BIREFRINGENCE-LIKE 34 1Chr01:43072403–43076304 (+)8.93e-11
Glyma.01G125400 hypothetical protein NA 1Chr01:43394231–43404097 (-)8.93e-11
Glyma.01G125500 hypothetical protein NA 1Chr01:43398981–43401979 (+)8.93e-11
Glyma.01G126000 hypothetical protein AT5G01650:AT5G01650:Tautomerase/MIF superfamily protein 1Chr01:43477322–43480661 (-)8.93e-11
Glyma.01G126300 hypothetical protein NA 1Chr01:43513210–43516682 (-)8.93e-11
Glyma.01G126400 hypothetical protein NA 1Chr01:43526917–43529405 (-)8.93e-11
Glyma.01G126500 hypothetical protein NA 1Chr01:43543307–43549330 (-)8.93e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)3.442e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)3.442e-12
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.78e-12
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)3.906e-18
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.37e-14
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.23e-11
Glyma.04G104400 hypothetical protein NA 1Chr04:9885009–9889282 (+)1.593e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)4.104e-12
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)3.195e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)5.938e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.17e-11
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.17e-11
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)3.483e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.792e-12
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.791e-12
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.792e-12
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.084e-13
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)3.792e-12
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)6.883e-16
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)6.883e-16
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)6.883e-16
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)5.835e-11
Glyma.06G301100 hypothetical protein AT2G16030:AT2G16030:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr06:49013527–49014231 (+)1.246e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)9.623e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)9.623e-11
Glyma.06G315100 hypothetical protein AT5G04930:ALA1:aminophospholipid ATPase 1 1Chr06:50401945–50408153 (+)6.922e-12
Glyma.06G317100 hypothetical protein AT5G61520:AT5G61520:Major facilitator superfamily protein 1Chr06:50586679–50589765 (+)1.82e-11
Glyma.07G021100 hypothetical protein NA 1Chr07:1647678–1650627 (+)5.971e-11
Glyma.07G021600 hypothetical protein AT5G48930:HCT:hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase 1Chr07:1673827–1680014 (-)5.971e-11
Glyma.07G021700 hypothetical protein NA 1Chr07:1684537–1692320 (+)3.2e-11
Glyma.07G021800 hypothetical protein AT1G80920:J8:Chaperone DnaJ-domain superfamily protein 1Chr07:1697119–1698666 (+)4.103e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)9.365e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)9.365e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)7.993e-12
Glyma.07G069600 hypothetical protein AT4G00370:ANTR2:Major facilitator superfamily protein 1Chr07:6307073–6313498 (-)9.043e-11
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)6.72e-11
Glyma.08G016700 hypothetical protein AT1G63840:AT1G63840:RING/U-box superfamily protein 1Chr08:1330226–1331366 (-)1.779e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)9.685e-12
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)3.757e-11
Glyma.09G019300 hypothetical protein AT1G52520:FRS6:FAR1-related sequence 6 1Chr09:1514278–1517148 (+)1.892e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)3.285e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)3.51e-17
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.133e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)1.872e-22
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)1.872e-22
Glyma.10G079700 hypothetical protein AT2G35980:YLS9:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein family 1Chr10:9218478–9219468 (-)1.108e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)1.872e-22
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)1.872e-22
Glyma.10G080400 hypothetical protein AT2G33990:iqd9:IQ-domain 9 1Chr10:9454616–9455485 (+)2.975e-15
Glyma.10G080600 hypothetical protein NA 1Chr10:9501678–9504456 (+)5.667e-12
Glyma.10G080700 hypothetical protein NA 1Chr10:9510013–9512097 (+)5.667e-12
Glyma.10G080900 hypothetical protein NA 1Chr10:9552268–9552854 (+)5.667e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)1.266e-23
Glyma.10G081300 hypothetical protein NA 1Chr10:9621308–9625766 (-)2.975e-15
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)3.855e-12
Glyma.10G274700 hypothetical protein AT1G68560:XYL1:alpha-xylosidase 1__AT3G45940:AT3G45940:Glycosyl hydrolases family 31 protein 1Chr10:49769554–49774168 (-)3.561e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)3.69e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)7.076e-11
Glyma.11G089300 hypothetical protein AT1G14120:AT1G14120:2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 1Chr11:6759141–6761139 (-)4.531e-11
Glyma.11G090300 hypothetical protein AT4G19190:AT4G19190:zinc knuckle (CCHC-type) family protein 1Chr11:6849007–6855564 (+)9.311e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)6.089e-11
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)6.089e-11
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)6.089e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.907e-13
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)4.893e-13
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)1.206e-12
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)1.206e-12
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)2.855e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.668e-11
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.668e-11
Glyma.13G319600 hypothetical protein AT5G22740:CSLA02:cellulose synthase-like A02 1Chr13:41398196–41403950 (-)2.8e-12
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)2.403e-12
Glyma.14G068500 hypothetical protein NA 1Chr14:5741909–5745574 (-)2.272e-11
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.407e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.767e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)3.457e-11
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)3.457e-11
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)3.457e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)9.91e-12
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)9.91e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)3.07e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.741e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.647e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.741e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.741e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.907e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.729e-15
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)8.283e-12
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)3.474e-11
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)3.474e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.297e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)9.861e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)4.342e-12
Glyma.16G146300 hypothetical protein NA 1Chr16:30714315–30716624 (+)8.252e-11
Glyma.16G146700 hypothetical protein NA 1Chr16:30755899–30759360 (-)8.252e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)6.578e-15
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)6.653e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)8.73e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 1Chr16:35831912–35835153 (+)6.111e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)6.748e-12
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)4.308e-11
Glyma.18G251000 hypothetical protein NA 1Chr18:53738009–53740714 (+)8.424e-12
Glyma.18G252100 hypothetical protein AT1G02090:FUS5:Proteasome component (PCI) domain protein 1Chr18:53885762–53894767 (+)4.218e-11
Glyma.18G260700 hypothetical protein NA 1Chr18:54660451–54661757 (+)5.961e-14
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.216e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)8.354e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)8.407e-12
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)8.407e-12
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)1.906e-13
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)7.428e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)4.533e-12