Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33471

Metabolite ID
P33471
Deionized mass
548.1401 Da
Average m/z
549.1495
Average RT
17.0416
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 4Chr16:24626024–24635513 (+)5.87e-13
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)1.857e-14
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)1.167e-11
Glyma.08G117700 hypothetical protein NA 2Chr08:9080318–9084658 (-)4.552e-11
Glyma.09G057000 hypothetical protein NA 2Chr09:5140625–5145658 (+)3.855e-12
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)1.857e-14
Glyma.20G120200 hypothetical protein NA 2Chr20:36268998–36282456 (-)2.188e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)8.521e-11
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.675e-13
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)5.373e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)7.319e-25
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.459e-23
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)2.567e-17
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)1.331e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)4.293e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.941e-13
Glyma.09G052700 hypothetical protein AT1G31120:KUP10:K+ uptake permease 10 1Chr09:4617652–4626364 (+)4.045e-12
Glyma.09G053800 hypothetical protein NA 1Chr09:4737413–4755632 (-)9.193e-11
Glyma.09G056900 hypothetical protein NA 1Chr09:5128829–5132737 (+)1.437e-11
Glyma.09G057300 hypothetical protein AT5G57330:AT5G57330:Galactose mutarotase-like superfamily protein 1Chr09:5164998–5171598 (-)1.57e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)2.164e-13
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)1.645e-11
Glyma.09G187700 hypothetical protein AT3G24420:AT3G24420:alpha/beta-Hydrolases superfamily protein 1Chr09:41217358–41221592 (-)6.816e-12
Glyma.09G270200 hypothetical protein AT5G01020:AT5G01020:Protein kinase superfamily protein 1Chr09:48725417–48728520 (-)7.037e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.334e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.334e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.334e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.334e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.963e-11
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)9.17e-12
Glyma.11G154900 PRP3 NA 1Chr11:12643089–12645488 (+)5.96e-11
Glyma.11G182600 hypothetical protein AT5G22400:AT5G22400:Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein 1Chr11:24998933–25003549 (-)2.699e-13
Glyma.11G182700 hypothetical protein AT1G32250:AT1G32250:Calcium-binding EF-hand family protein 1Chr11:25028353–25031056 (-)1.696e-12
Glyma.11G182800 hypothetical protein AT2G27460:AT2G27460:sec23/sec24 transport family protein 1Chr11:25044939–25052549 (+)1.766e-11
Glyma.13G049100 hypothetical protein NA 1Chr13:14498952–14506408 (-)1.848e-12
Glyma.13G049200 hypothetical protein AT3G02440:TBL20:TRICHOME BIREFRINGENCE-LIKE 20 1Chr13:14515169–14519326 (-)7.181e-11
Glyma.13G049400 hypothetical protein AT2G20000:HBT:CDC27 family protein 1Chr13:14530308–14541307 (-)7.181e-11
Glyma.13G052800 hypothetical protein NA 1Chr13:15005141–15009623 (+)6.902e-13
Glyma.13G053300 hypothetical protein NA 1Chr13:15064460–15069264 (-)7.577e-11
Glyma.13G170600 ALDH2B6 aldehyde dehydrogenase family 2 member B6 AT1G23800:ALDH2B7:aldehyde dehydrogenase 2B7 1Chr13:28436396–28440865 (-)3.002e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)2.765e-12
Glyma.15G035600 hypothetical protein AT3G46740:TOC75-III:translocon at the outer envelope membrane of chloroplasts 75-III 1Chr15:2830678–2835534 (+)5.198e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)3.747e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)4.64e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)3.747e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)3.747e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)5.87e-13
Glyma.16G111400 hypothetical protein AT4G35510:AT4G35510:PHD finger-like protein 1Chr16:24546422–24549336 (+)1.099e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)1.167e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)1.167e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)1.167e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)1.167e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)5.691e-12
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.131e-12
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)9.389e-13
Glyma.16G121000 IQD20 AT3G51380:IQD20:IQ-domain 20 1Chr16:26909514–26910355 (+)5.679e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.05e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)2.492e-14
Glyma.16G219700 hypothetical protein NA 1Chr16:37690133–37695529 (-)9.763e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.375e-13
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.375e-13
Glyma.19G218100 hypothetical protein AT1G02390:GPAT2:glycerol-3-phosphate acyltransferase 2 1Chr19:47082133–47085750 (+)3.698e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 1Chr20:34984922–34988496 (+)3.631e-11