Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33300

Metabolite ID
P33300
Deionized mass
180.1141 Da
Average m/z
181.1207
Average RT
16.9870
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
63
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

63 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.06G313500 hypothetical protein NA 2Chr06:50191600–50203098 (-)2.176e-12
Glyma.08G122200 hypothetical protein NA 2Chr08:9416766–9429995 (-)1.771e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 2Chr08:9435391–9437279 (+)1.771e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)1.771e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)8.905e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 2Chr13:24677399–24693129 (-)3.397e-11
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)2.009e-12
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)1.621e-12
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)3.998e-11
Glyma.01G034700 hypothetical protein NA 1Chr01:3599923–3602578 (-)1.443e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.807e-12
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.807e-12
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)1.242e-11
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)4.791e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)9.084e-16
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.667e-12
Glyma.08G119300 hypothetical protein AT1G29330:ERD2:ER lumen protein retaining receptor family protein 1Chr08:9198213–9201688 (-)6.597e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)1.956e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)1.771e-11
Glyma.08G122600 hypothetical protein NA 1Chr08:9445153–9450502 (+)5.555e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)1.771e-11
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)4.339e-11
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)9.935e-11
Glyma.09G249500 hypothetical protein NA 1Chr09:47056885–47062577 (+)1.123e-11
Glyma.09G252100 hypothetical protein AT1G79790:FHY1:Haloacid dehalogenase-like hydrolase (HAD) superfamily protein 1Chr09:47245185–47248478 (+)8.298e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)2.491e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)2.491e-11
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)4.236e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)7.051e-11
Glyma.11G062400 hypothetical protein AT4G36860:AT4G36860:LIM domain-containing protein 1Chr11:4720040–4726569 (+)7.78e-11
Glyma.11G065000 hypothetical protein AT4G36730:GBF1:G-box binding factor 1 1Chr11:4916855–4922192 (+)8.73e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)3.279e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)2.104e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)2.104e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)3.871e-12
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)2.386e-14
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)2.5e-12
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)2.5e-12
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)8.563e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)3.397e-11
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)1.504e-13
Glyma.13G135700 hypothetical protein NA 1Chr13:24812720–24818735 (+)1.504e-13
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 1Chr13:24820151–24823999 (-)1.504e-13
Glyma.14G093100 hypothetical protein NA 1Chr14:8654730–8655892 (-)1.34e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)2.009e-12
Glyma.14G201800 hypothetical protein AT5G58390:AT5G58390:Peroxidase superfamily protein 1Chr14:46728613–46733836 (+)2.533e-11
Glyma.14G204400 hypothetical protein AT2G30470:HSI2:B3 domain-containing transcription repressor VAL1 1Chr14:46936057–46943868 (-)7.783e-11
Glyma.15G141100 hypothetical protein NA 1Chr15:11554310–11555089 (+)8.858e-11
Glyma.16G105100 hypothetical protein NA 1Chr16:21259552–21267517 (-)3.695e-11
Glyma.16G105400 hypothetical protein AT2G43040:NPG1:tetratricopeptide repeat (TPR)-containing protein 1Chr16:21357465–21364357 (-)1.637e-11
Glyma.16G106300 hypothetical protein AT5G23900:AT5G23900:Ribosomal protein L13e family protein 1Chr16:21495147–21497932 (+)2.235e-12
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)1.621e-12
Glyma.16G112600 hypothetical protein NA 1Chr16:25015407–25020098 (-)1.219e-11
Glyma.16G113000 hypothetical protein NA 1Chr16:25112070–25116073 (+)3.167e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)7.165e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)3.986e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)7.421e-12
Glyma.17G212300 hypothetical protein AT5G25310:AT5G25310:Exostosin family protein 1Chr17:35122156–35129564 (-)5.539e-11
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)3.998e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)9.987e-11
Glyma.18G266100 hypothetical protein NA 1Chr18:55052591–55056489 (-)4.612e-13
Glyma.18G266400 hypothetical protein AT3G29390:RIK:RS2-interacting KH protein 1Chr18:55076548–55086297 (+)3.827e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)1.775e-11