Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33021

Metabolite ID
P33021
Deionized mass
535.2335 Da
Average m/z
536.2382
Average RT
16.8834
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
123
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

123 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)7.591e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.666e-12
Glyma.13G134400 hypothetical protein AT2G37370:AT2G37370:centrosomal protein of 135 kDa-like protein 3Chr13:24677399–24693129 (-)7.025e-15
Glyma.03G019600 hypothetical protein AT2G45640:SAP18:SIN3 associated polypeptide P18 2Chr03:2007617–2009871 (+)1.958e-12
Glyma.06G209300 hypothetical protein NA 2Chr06:20573671–20581076 (-)7.656e-13
Glyma.09G274700 hypothetical protein NA 2Chr09:49057465–49065986 (-)8.413e-11
Glyma.09G275800 hypothetical protein NA 2Chr09:49116424–49122191 (-)8.412e-11
Glyma.09G276100 hypothetical protein AT2G38510:AT2G38510:MATE efflux family protein 2Chr09:49139110–49143810 (-)8.412e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)4.733e-12
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 2Chr09:49863377–49871270 (+)1.076e-13
Glyma.12G203700 hypothetical protein AT4G28260:AT4G28260:acyl-UDP-N-acetylglucosamine O-acyltransferase 2Chr12:36406747–36413696 (+)2.368e-15
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 2Chr12:36473422–36498915 (+)1.177e-15
Glyma.13G135700 hypothetical protein NA 2Chr13:24812720–24818735 (+)4.488e-18
Glyma.13G135800 hypothetical protein AT5G02800:CDL1:Protein kinase superfamily protein 2Chr13:24820151–24823999 (-)4.488e-18
Glyma.16G111500 hypothetical protein AT4G35500:AT4G35500:Protein kinase superfamily protein 2Chr16:24626024–24635513 (+)3.275e-11
Glyma.16G117400 hypothetical protein NA 2Chr16:26234552–26238233 (-)6.15e-14
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)1.412e-14
Glyma.17G215800 Aberrant root formation protein 4 AT5G11030:ALF4:aberrant root formation protein 2Chr17:36328551–36338097 (+)7.93e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)7.591e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)2.365e-11
Glyma.03G016700 hypothetical protein AT4G00740:QUA3:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr03:1683395–1688893 (-)5.82e-11
Glyma.03G018600 hypothetical protein AT2G45695:AT2G45695:Ubiquitin related modifier 1 1Chr03:1859210–1862572 (-)3.833e-11
Glyma.03G018800 hypothetical protein AT2G45680:TCP9:TCP family transcription factor 1Chr03:1875182–1876855 (+)2.354e-11
Glyma.03G019700 hypothetical protein AT3G61130:GAUT1:galacturonosyltransferase 1 1Chr03:2010835–2018418 (+)1.892e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)8.598e-15
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)3.047e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)8.658e-13
Glyma.05G126400 hypothetical protein NA 1Chr05:31961493–31968339 (+)4.16e-12
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)2.559e-12
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.307e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.307e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)2.879e-12
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)1.084e-11
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)1.084e-11
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)1.084e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)3.228e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)7.722e-11
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.158e-13
Glyma.06G084800 hypothetical protein NA 1Chr06:6515571–6517480 (-)4.287e-13
Glyma.06G085000 hypothetical protein NA 1Chr06:6524339–6529016 (-)4.288e-13
Glyma.06G085100 hypothetical protein NA 1Chr06:6531956–6537295 (-)4.287e-13
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)5.353e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.721e-14
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.721e-14
Glyma.06G126500 hypothetical protein AT5G04070:AT5G04070:NAD(P)-binding Rossmann-fold superfamily protein 1Chr06:10367536–10373426 (-)3.362e-12
Glyma.06G126900 hypothetical protein AT5G04520:AT5G04520:3-oxoacyl-acyl-carrier synthase-like protein (Protein of unknown function DUF455) 1Chr06:10403126–10408307 (-)7.46e-12
Glyma.06G200200 hypothetical protein NA 1Chr06:18327920–18331068 (-)4.529e-11
Glyma.06G204200 hypothetical protein AT5G08050:AT5G08050:wiskott-aldrich syndrome family protein, putative (DUF1118) 1Chr06:19170925–19173352 (+)8.315e-11
Glyma.06G207900 hypothetical protein NA 1Chr06:20278974–20282107 (-)4.72e-12
Glyma.06G208000 hypothetical protein AT1G74000:SS3:strictosidine synthase 3 1Chr06:20286288–20288769 (+)4.72e-12
Glyma.06G208900 hypothetical protein NA 1Chr06:20515068–20521900 (-)4.72e-12
Glyma.06G209400 hypothetical protein NA 1Chr06:20622369–20629712 (+)4.72e-12
Glyma.06G209600 hypothetical protein AT1G48960:AT1G48960:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:20638577–20641470 (+)4.72e-12
Glyma.06G210000 hypothetical protein NA 1Chr06:20706632–20708144 (-)4.72e-12
Glyma.06G210100 hypothetical protein NA 1Chr06:20725481–20728890 (-)4.72e-12
Glyma.06G210400 hypothetical protein AT1G03280:AT1G03280:Transcription factor TFIIE, alpha subunit 1Chr06:20768340–20778709 (-)4.72e-12
Glyma.06G210900 hypothetical protein AT3G24330:AT3G24330:O-Glycosyl hydrolases family 17 protein 1Chr06:20942818–20945744 (+)4.72e-12
Glyma.06G211500 hypothetical protein AT5G19950:AT5G19950:tudor domain protein (DUF1767) 1Chr06:21104409–21114116 (-)4.72e-12
Glyma.06G211700 hypothetical protein NA 1Chr06:21226061–21226529 (-)9.777e-12
Glyma.06G211800 hypothetical protein NA 1Chr06:21237649–21239875 (+)9.777e-12
Glyma.06G213600 hypothetical protein NA 1Chr06:21713618–21726865 (+)9.777e-12
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)5.181e-12
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.316e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)5.181e-12
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)5.181e-12
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.316e-12
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)9.061e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.666e-12
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.667e-12
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.249e-13
Glyma.07G017600 hypothetical protein NA 1Chr07:1415837–1422680 (+)2.779e-14
Glyma.08G039600 hypothetical protein NA 1Chr08:3107698–3116601 (-)8.485e-11
Glyma.08G148500 hypothetical protein AT3G19860:bHLH121:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr08:11362991–11368184 (-)7.133e-12
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)6.077e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)1.915e-11
Glyma.09G274900 hypothetical protein AT5G02280:AT5G02280:SNARE-like superfamily protein 1Chr09:49069946–49073277 (-)8.413e-11
Glyma.09G275100 hypothetical protein AT3G08760:ATSIK:Protein kinase superfamily protein 1Chr09:49079101–49084269 (-)8.413e-11
Glyma.09G275300 hypothetical protein NA 1Chr09:49094668–49096996 (-)8.413e-11
Glyma.09G275900 hypothetical protein AT5G01850:AT5G01850:Protein kinase superfamily protein 1Chr09:49128687–49133154 (-)8.413e-11
Glyma.09G276000 hypothetical protein NA 1Chr09:49131662–49132187 (+)8.413e-11
Glyma.12G096000 hypothetical protein AT1G08465:YAB2:Plant-specific transcription factor YABBY family protein 1Chr12:8080306–8088711 (-)5.352e-12
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)1.372e-11
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)1.372e-11
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)2.738e-13
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)2.738e-13
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)8.525e-11
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.853e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)1.428e-15
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)1.177e-15
Glyma.12G204600 hypothetical protein AT4G28310:AT4G28310:microtubule-associated protein 1Chr12:36504234–36505245 (+)1.08e-13
Glyma.12G205900 hypothetical protein NA 1Chr12:36622011–36625824 (+)5.886e-12
Glyma.12G212800 hypothetical protein NA 1Chr12:37179924–37185798 (-)8.967e-11
Glyma.13G134300 hypothetical protein NA 1Chr13:24664171–24665742 (-)7.025e-15
Glyma.13G134500 hypothetical protein AT3G09560:PAH1:Lipin family protein 1Chr13:24696109–24705068 (-)2.085e-13
Glyma.13G135300 hypothetical protein NA 1Chr13:24770681–24773826 (+)1.409e-16
Glyma.13G135400 hypothetical protein AT5G12130:PDE149:integral membrane TerC family protein 1Chr13:24786242–24791938 (+)1.409e-16
Glyma.13G135500 hypothetical protein AT5G02780:GSTL1:glutathione transferase lambda 1 1Chr13:24798567–24801567 (+)4.488e-18
Glyma.13G136500 hypothetical protein NA 1Chr13:24910198–24916336 (-)8.449e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)2.694e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)3.879e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)2.694e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)2.694e-11
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)4.934e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)6.437e-12
Glyma.15G138500 hypothetical protein NA 1Chr15:11270083–11275565 (-)5.915e-11
Glyma.16G050500 AFB3B auxin signaling F-box 3 protein AT3G26810:AFB2:auxin signaling F-box 2 1Chr16:4853237–4856710 (+)6.731e-13
Glyma.16G050900 COL16 NA 1Chr16:4874634–4878624 (+)9.571e-11
Glyma.16G064100 hypothetical protein NA 1Chr16:6322034–6325343 (-)5.976e-11
Glyma.16G111100 hypothetical protein NA 1Chr16:24438458–24444801 (+)3.275e-11
Glyma.16G117700 hypothetical protein NA 1Chr16:26279957–26283458 (+)3.256e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)3.38e-12
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.375e-12
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)1.834e-11
Glyma.16G147400 hypothetical protein NA 1Chr16:30817535–30821568 (+)7.518e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.085e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)5.43e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)5.43e-11
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)1.655e-13
Glyma.17G215700 hypothetical protein AT5G11040:TRS120:TRS120 1Chr17:36319785–36329259 (-)7.931e-11
Glyma.18G099700 hypothetical protein AT5G54860:AT5G54860:Major facilitator superfamily protein 1Chr18:10459970–10464888 (-)9.691e-11
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 1Chr19:1155711–1161298 (-)6.129e-14
Glyma.19G012300 hypothetical protein NA 1Chr19:1165111–1173031 (-)6.129e-14
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)9.769e-12