Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P33000

Metabolite ID
P33000
Deionized mass
630.2175 Da
Average m/z
631.2241
Average RT
16.8741
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
59
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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Associated genes

59 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)9.125e-11
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)7.574e-14
Glyma.14G201600 hypothetical protein NA 2Chr14:46703283–46706500 (+)7.007e-12
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)1.33e-20
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)1.33e-20
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)9.125e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)2.501e-11
Glyma.03G177700 hypothetical protein NA 1Chr03:39046772–39051158 (+)5.427e-11
Glyma.03G209700 hypothetical protein NA 1Chr03:41646792–41648527 (+)3.804e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)7.574e-14
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)7.574e-14
Glyma.09G016500 hypothetical protein NA 1Chr09:1274652–1276853 (-)2.86e-12
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)2.75e-12
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)1.844e-11
Glyma.09G133800 hypothetical protein NA 1Chr09:33268295–33269240 (+)8.476e-13
Glyma.09G255700 hypothetical protein AT1G01540:AT1G01540:Protein kinase superfamily protein__AT4G01330:AT4G01330:Protein kinase superfamily protein 1Chr09:47507850–47511743 (+)5.711e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)6.975e-11
Glyma.10G038200 hypothetical protein NA 1Chr10:3394443–3395342 (-)2.967e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)9.73e-13
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)9.73e-13
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)9.73e-13
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)9.73e-13
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)3.732e-13
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.066e-14
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)5.812e-11
Glyma.10G236000 hypothetical protein NA 1Chr10:46499079–46501955 (-)3.486e-11
Glyma.10G236100 hypothetical protein AT5G52280:AT5G52280:Myosin heavy chain-related protein 1Chr10:46503152–46510614 (-)3.486e-11
Glyma.10G236800 hypothetical protein NA 1Chr10:46559759–46563487 (+)3.486e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.955e-13
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.438e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.438e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.438e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.438e-12
Glyma.11G122500 hypothetical protein AT1G49430:LACS2:long-chain acyl-CoA synthetase 2 1Chr11:9336389–9344401 (+)4.121e-11
Glyma.11G125600 hypothetical protein AT2G46200:AT2G46200:U11/U12 small nuclear ribonucleoprotein 1Chr11:9540747–9545520 (-)5.084e-14
Glyma.11G126100 hypothetical protein AT1G08450:CRT3:calreticulin 3 1Chr11:9581659–9588340 (+)2.297e-11
Glyma.11G127100 hypothetical protein AT1G06040:STO:B-box zinc finger family protein 1Chr11:9656242–9659517 (+)1.934e-14
Glyma.11G127200 hypothetical protein AT3G59480:AT3G59480:pfkB-like carbohydrate kinase family protein 1Chr11:9660434–9665570 (-)1.934e-14
Glyma.11G127300 hypothetical protein AT2G28480:AT2G28480:RNA-binding CRS1 / YhbY (CRM) domain protein 1Chr11:9667918–9671917 (-)1.934e-14
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)5.892e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)5.892e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.109e-11
Glyma.13G181100 hypothetical protein AT2G47960:AT2G47960:trafficking protein particle complex subunit-like protein 1Chr13:29426889–29433599 (-)4.821e-11
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)3.023e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)7.007e-12
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)1.015e-16
Glyma.16G019400 SHAT1-5 NAC domain-containing protein 43-like NA 1Chr16:1725643–1728272 (+)1.589e-13
Glyma.16G020200 hypothetical protein NA 1Chr16:1828561–1835982 (-)3.326e-16
Glyma.16G020500 hypothetical protein AT4G00870:AT4G00870:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr16:1877938–1879947 (-)3.284e-13
Glyma.16G121500 hypothetical protein NA 1Chr16:27007186–27010856 (+)2.971e-12
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)7.233e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)7.233e-11
Glyma.17G251200 hypothetical protein NA 1Chr17:40605249–40607536 (+)4.285e-11
Glyma.18G263900 hypothetical protein AT5G15410:DND1:Cyclic nucleotide-regulated ion channel family protein 1Chr18:54907058–54912936 (-)2.9e-12
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)7.75e-11
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 1Chr19:1123637–1130946 (+)7.75e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)1.645e-13
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)1.609e-12
Glyma.20G109600 hypothetical protein AT3G14290:PAE2:20S proteasome alpha subunit E2__AT1G53850:PAE1:20S proteasome alpha subunit E1 1Chr20:35200934–35205885 (-)3.465e-11