Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P32642

Metabolite ID
P32642
Deionized mass
614.3751 Da
Average m/z
615.3831
Average RT
16.7398
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
89
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

89 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.14G170900 hypothetical protein AT1G78060:AT1G78060:Glycosyl hydrolase family protein 4Chr14:42298358–42306613 (-)5.093e-12
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)9.031e-11
Glyma.10G263800 hypothetical protein AT1G23010:LPR1:Cupredoxin superfamily protein 2Chr10:48805999–48811533 (-)8.164e-11
Glyma.16G209300 hypothetical protein NA 2Chr16:36856833–36863994 (-)4.815e-11
Glyma.19G029600 hypothetical protein NA 2Chr19:3681517–3690884 (-)6.219e-12
Glyma.20G107200 hypothetical protein AT4G38540:AT4G38540:FAD/NAD(P)-binding oxidoreductase family protein 2Chr20:34984922–34988496 (+)1.569e-11
Glyma.01G120000 hypothetical protein NA 1Chr01:41270985–41274854 (+)4.628e-11
Glyma.01G123900 hypothetical protein AT3G51770:ETO1:tetratricopeptide repeat (TPR)-containing protein 1Chr01:42831758–42837350 (+)5.349e-11
Glyma.02G133800 hypothetical protein AT1G49660:CXE5:carboxyesterase 5 1Chr02:13850366–13851962 (-)3.372e-12
Glyma.03G223000 hypothetical protein AT1G02500:SAM1:S-adenosylmethionine synthetase 1 1Chr03:42579900–42582675 (+)5.61e-12
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)1.947e-11
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)4.18e-12
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)4.18e-12
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)1.026e-13
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.729e-13
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.729e-13
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.729e-13
Glyma.05G224500 hypothetical protein NA 1Chr05:40342583–40345336 (+)1.014e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)1.448e-11
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)1.68e-14
Glyma.05G226400 hypothetical protein AT4G29140:ADS1:MATE efflux family protein 1Chr05:40480968–40482410 (-)3.881e-11
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)6.936e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)9.212e-13
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)5.441e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)5.441e-12
Glyma.07G068200 hypothetical protein AT4G00310:EDA8:Putative membrane lipoprotein 1Chr07:6146155–6148036 (-)1.198e-11
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)9.031e-11
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)9.031e-11
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)9.031e-11
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)9.031e-11
Glyma.08G149500 hypothetical protein NA 1Chr08:11460264–11465243 (-)1.209e-11
Glyma.08G202000 hypothetical protein AT1G52150:ATHB-15:Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein 1Chr08:16375907–16384294 (-)4.902e-13
Glyma.08G210200 hypothetical protein NA 1Chr08:17010526–17012557 (+)9.31e-13
Glyma.08G210300 hypothetical protein NA 1Chr08:17011623–17012548 (-)9.31e-13
Glyma.08G211800 hypothetical protein NA 1Chr08:17104514–17105442 (-)3.697e-15
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)6.632e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)6.632e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)6.632e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)6.632e-12
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)2.472e-12
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)2.248e-12
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)2.248e-12
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)2.248e-12
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)2.248e-12
Glyma.11G064300 hypothetical protein AT4G36780:BEH2:BES1/BZR1 homolog 2 1Chr11:4849799–4851673 (+)4.009e-11
Glyma.11G240600 hypothetical protein NA 1Chr11:33491895–33493311 (+)8.658e-11
Glyma.11G241300 hypothetical protein AT4G39990:RABA4B:RAB GTPase homolog A4B 1Chr11:33552339–33555298 (+)3.364e-13
Glyma.13G203200 hypothetical protein AT3G52105:AT3G52105:DIS3-exonuclease-like protein 1Chr13:31720004–31725252 (+)6.716e-11
Glyma.13G203300 hypothetical protein AT3G63530:BB:RING/U-box superfamily protein 1Chr13:31727841–31735910 (-)6.716e-11
Glyma.13G203700 hypothetical protein NA 1Chr13:31780982–31784218 (+)6.717e-11
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.009e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.993e-11
Glyma.14G171100 hypothetical protein NA 1Chr14:42357087–42363791 (-)5.093e-12
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.306e-11
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)2.179e-11
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.306e-11
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.306e-11
Glyma.15G216700 hypothetical protein NA 1Chr15:35649229–35652466 (-)7.203e-12
Glyma.15G216900 hypothetical protein NA 1Chr15:35680524–35686654 (-)7.203e-12
Glyma.15G217100 hypothetical protein NA 1Chr15:35830853–35832075 (-)7.203e-12
Glyma.16G028100 hypothetical protein AT3G07570:AT3G07570:Cytochrome b561/ferric reductase transmembrane with DOMON related domain-containing protein 1Chr16:2725294–2733429 (-)4.217e-12
Glyma.16G057500 hypothetical protein NA 1Chr16:5631176–5634867 (-)7.471e-12
Glyma.16G057700 hypothetical protein AT3G27180:AT3G27180:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr16:5656328–5663040 (-)2.791e-13
Glyma.16G116200 hypothetical protein AT4G35560:DAW1:Transducin/WD40 repeat-like superfamily protein 1Chr16:25892277–25904773 (+)4.333e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)2.554e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)2.22e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 1Chr16:26324650–26336836 (+)1.821e-11
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)1.372e-11
Glyma.16G180000 hypothetical protein NA 1Chr16:34064572–34069421 (+)7.877e-11
Glyma.16G180100 hypothetical protein NA 1Chr16:34070806–34076053 (+)7.877e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 1Chr16:35170253–35173950 (-)3.401e-14
Glyma.16G194000 hypothetical protein AT3G48900:AT3G48900:single-stranded DNA endonuclease family protein 1Chr16:35625666–35634395 (-)4.835e-11
Glyma.16G194100 hypothetical protein NA 1Chr16:35633570–35637343 (+)4.835e-11
Glyma.16G210300 hypothetical protein AT1G73340:AT1G73340:Cytochrome P450 superfamily protein 1Chr16:36943073–36948828 (+)3.425e-11
Glyma.16G210400 hypothetical protein AT1G73350:AT1G73350:ankyrin repeat protein 1Chr16:36949685–36953467 (+)3.425e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)2.254e-11
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)2.254e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)9.38e-12
Glyma.18G236700 hypothetical protein AT3G61490:AT3G61490:Pectin lyase-like superfamily protein 1Chr18:52558809–52562720 (+)4.194e-11
Glyma.19G027700 hypothetical protein AT5G15440:EDL1:EID1-like 1 1Chr19:3471299–3475645 (+)6.383e-11
Glyma.19G028100 hypothetical protein AT3G01040:GAUT13:galacturonosyltransferase 13 1Chr19:3511914–3519141 (+)1.769e-11
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)8.599e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)8.006e-14
Glyma.20G106800 hypothetical protein AT4G38520:AT4G38520:Protein phosphatase 2C family protein__AT3G51370:AT3G51370:Protein phosphatase 2C family protein 1Chr20:34935548–34940516 (-)3.041e-12
Glyma.20G106900 hypothetical protein NA 1Chr20:34962043–34967985 (+)2.824e-15
Glyma.20G107500 hypothetical protein AT2G16910:AMS:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 1Chr20:35011922–35015196 (-)4.739e-11
Glyma.20G108900 hypothetical protein AT4G24175:AT4G24175:kinesin-like protein 1Chr20:35119868–35122488 (+)5.861e-15
Glyma.20G109000 hypothetical protein AT4G32640:AT4G32640:Sec23/Sec24 protein transport family protein__AT3G44340:CEF:uncharacterized protein 1Chr20:35134138–35152085 (-)1.378e-12
Glyma.20G109800 hypothetical protein AT2G35130:AT2G35130:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr20:35213258–35219502 (+)2.538e-12