Overview Annotation GWAS Evidence Associated genes

P32493

Metabolite ID
P32493
Deionized mass
704.1931 Da
Average m/z
705.2046
Average RT
16.6917
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
139
GWAS result file
Available

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

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This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

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Associated genes

139 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G011800 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 4Chr19:1134716–1143232 (+)1.133e-14
Glyma.06G305700 hypothetical protein AT2G05710:ACO3:aconitase 3 3Chr06:49451501–49461369 (-)2.821e-11
Glyma.16G147900 hypothetical protein NA 3Chr16:30864919–30872425 (+)2.399e-13
Glyma.01G045600 hypothetical protein NA 2Chr01:5242432–5245038 (-)5.453e-11
Glyma.10G081700 hypothetical protein NA 2Chr10:9752508–9758422 (+)2.313e-12
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.828e-13
Glyma.19G011700 hypothetical protein AT3G01420:DOX1:Peroxidase superfamily protein 2Chr19:1123637–1130946 (+)1.132e-15
Glyma.19G011900 hypothetical protein AT3G28140:AT3G28140:RNA ligase/cyclic nucleotide phosphodiesterase family protein__AT5G40190:AT5G40190:RNA ligase/cycli… 2Chr19:1148510–1149495 (+)1.133e-14
Glyma.19G012100 hypothetical protein AT3G28150:TBL22:TRICHOME BIREFRINGENCE-LIKE 22 2Chr19:1155711–1161298 (-)6.988e-24
Glyma.19G012300 hypothetical protein NA 2Chr19:1165111–1173031 (-)6.988e-24
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)5.453e-11
Glyma.01G099100 hypothetical protein NA 1Chr01:33017228–33023840 (+)8.229e-11
Glyma.01G099600 hypothetical protein AT3G53930:AT3G53930:Protein kinase superfamily protein__AT2G37840:AT2G37840:Protein kinase superfamily protein 1Chr01:33115843–33125726 (-)8.229e-11
Glyma.01G099900 hypothetical protein NA 1Chr01:33275414–33282430 (+)8.229e-11
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)1.514e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)1.514e-11
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 1Chr01:51219681–51224948 (+)9.002e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)3.959e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)9.514e-11
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.677e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)5.797e-15
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 1Chr03:2423540–2428634 (-)2.23e-15
Glyma.03G031700 hypothetical protein AT1G79600:AT1G79600:Protein kinase superfamily protein 1Chr03:3567906–3572939 (-)5.568e-11
Glyma.03G136000 hypothetical protein NA 1Chr03:35138670–35188160 (-)8.174e-11
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)2.159e-13
Glyma.04G084300 hypothetical protein AT2G25800:AT2G25800:elongation factor Ts (DUF810) 1Chr04:7153009–7158438 (+)3.561e-12
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)1.063e-12
Glyma.04G112200 hypothetical protein AT5G51750:SBT1.3:subtilase 1.3 1Chr04:12562882–12565006 (+)5.717e-11
Glyma.04G116900 hypothetical protein NA 1Chr04:13696275–13700803 (+)5.219e-11
Glyma.04G190200 hypothetical protein AT3G48330:PIMT1:protein-l-isoaspartate methyltransferase 1 1Chr04:46086785–46089618 (-)4.395e-11
Glyma.05G164700 hypothetical protein NA 1Chr05:35543931–35549196 (-)5.283e-12
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)2.705e-11
Glyma.06G085200 hypothetical protein NA 1Chr06:6540849–6545557 (+)4.574e-11
Glyma.06G125200 hypothetical protein AT4G27940:MTM1:manganese tracking factor for mitochondrial SOD2 1Chr06:10209787–10215982 (+)1.578e-12
Glyma.06G125300 hypothetical protein AT5G24105:AGP41:arabinogalactan protein 41 1Chr06:10216506–10218901 (-)1.578e-12
Glyma.06G201700 hypothetical protein NA 1Chr06:18577883–18617874 (+)1.93e-11
Glyma.06G261900 hypothetical protein NA 1Chr06:44875369–44879702 (-)5.307e-12
Glyma.06G275800 hypothetical protein AT2G30980:SKdZeta:SHAGGY-related protein kinase dZeta 1Chr06:46677753–46682900 (-)4.842e-14
Glyma.06G291600 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr06:48024204–48029614 (+)3.635e-11
Glyma.06G291800 hypothetical protein NA 1Chr06:48044194–48047197 (-)3.613e-12
Glyma.06G292000 hypothetical protein NA 1Chr06:48081084–48084476 (-)3.635e-11
Glyma.06G292100 hypothetical protein NA 1Chr06:48095366–48097378 (+)3.635e-11
Glyma.06G292200 hypothetical protein AT5G44290:AT5G44290:Protein kinase superfamily protein 1Chr06:48100578–48107433 (-)3.613e-12
Glyma.06G292400 hypothetical protein AT4G28320:MAN5:Glycosyl hydrolase superfamily protein 1Chr06:48130296–48134955 (+)9.138e-11
Glyma.06G292900 hypothetical protein AT4G03540:AT4G03540:Uncharacterized protein family (UPF0497) 1Chr06:48170133–48173010 (-)4.351e-11
Glyma.06G305300 hypothetical protein NA 1Chr06:49431590–49435985 (-)2.821e-11
Glyma.06G305600 hypothetical protein NA 1Chr06:49446542–49450635 (-)2.821e-11
Glyma.06G319500 hypothetical protein NA 1Chr06:50828930–50845232 (-)9.91e-11
Glyma.06G320000 hypothetical protein AT1G05740:AT1G05740:FAM136A-like protein (DUF842) 1Chr06:50870241–50873816 (+)2.471e-11
Glyma.06G320100 hypothetical protein AT5G56290:PEX5:peroxin 5 1Chr06:50874167–50888925 (-)2.471e-11
Glyma.07G015700 hypothetical protein AT1G79750:NADP-ME4:NADP-malic enzyme 4 1Chr07:1244977–1251198 (-)1.932e-14
Glyma.07G068400 hypothetical protein AT1G29320:AT1G29320:Transducin/WD40 repeat-like superfamily protein 1Chr07:6173172–6180430 (-)7.402e-11
Glyma.07G068600 hypothetical protein NA 1Chr07:6192764–6197166 (+)7.402e-11
Glyma.07G068700 hypothetical protein AT2G46060:AT2G46060:transmembrane protein-like protein 1Chr07:6200187–6208590 (+)3.287e-11
Glyma.07G068800 hypothetical protein NA 1Chr07:6211775–6221107 (-)3.287e-11
Glyma.07G069100 hypothetical protein NA 1Chr07:6246145–6250192 (+)7.402e-11
Glyma.07G069400 hypothetical protein AT2G46020:BRM:transcription regulatory protein SNF2 1Chr07:6270176–6283087 (-)9.893e-12
Glyma.07G075000 hypothetical protein AT5G60990:AT5G60990:DEA(D/H)-box RNA helicase family protein 1Chr07:6821674–6829551 (-)2.279e-12
Glyma.07G075300 hypothetical protein NA 1Chr07:6843882–6845602 (-)2.279e-12
Glyma.07G091400 COL21 CONSTANS-like zinc finger protein AT1G25440:BBX15:B-box type zinc finger protein with CCT domain-containing protein 1Chr07:8539101–8547001 (+)1.639e-11
Glyma.07G129600 hypothetical protein AT4G29670:ACHT2:atypical CYS HIS rich thioredoxin 2 1Chr07:15404178–15410144 (-)9.884e-12
Glyma.08G114700 hypothetical protein AT3G13600:AT3G13600:calmodulin-binding family protein 1Chr08:8768854–8772973 (-)4.764e-12
Glyma.08G114800 hypothetical protein AT5G19830:AT5G19830:Peptidyl-tRNA hydrolase family protein 1Chr08:8792663–8798214 (-)6.186e-12
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.5e-11
Glyma.09G016800 hypothetical protein NA 1Chr09:1300913–1311894 (+)1.933e-11
Glyma.09G018700 hypothetical protein NA 1Chr09:1470411–1472672 (-)7.499e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)1.128e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)7.778e-19
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)2.385e-17
Glyma.09G202900 hypothetical protein AT5G10560:AT5G10560:Glycosyl hydrolase family protein 1Chr09:42685911–42690981 (-)1.472e-11
Glyma.09G253800 hypothetical protein NA 1Chr09:47356240–47357763 (-)5.941e-11
Glyma.09G253900 hypothetical protein NA 1Chr09:47359742–47364806 (-)5.941e-11
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)7.383e-11
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)7.383e-11
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)7.383e-11
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)7.383e-11
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)4.479e-11
Glyma.10G082100 hypothetical protein AT3G05680:EMB2016:embryo defective 2016 1Chr10:9934486–9960586 (-)1.428e-11
Glyma.10G172600 hypothetical protein AT5G41900:AT5G41900:alpha/beta-Hydrolases superfamily protein__AT1G64670:BDG1:alpha/beta-Hydrolases superfamily protein 1Chr10:40628401–40633140 (-)4.909e-11
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)5.015e-11
Glyma.11G049700 hypothetical protein NA 1Chr11:3731308–3734534 (+)3.005e-11
Glyma.11G118200 hypothetical protein NA 1Chr11:8979431–8983783 (+)6.742e-11
Glyma.12G108600 hypothetical protein NA 1Chr12:9994609–9997302 (-)5.851e-12
Glyma.12G109500 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:10308026–10314332 (-)5.851e-12
Glyma.12G114500 hypothetical protein AT4G22930:PYR4:pyrimidin 4 1Chr12:11396572–11400825 (-)3.118e-14
Glyma.12G114900 hypothetical protein NA 1Chr12:11457987–11462951 (-)3.118e-14
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)3.621e-11
Glyma.12G183700 hypothetical protein AT2G27600:SKD1:AAA-type ATPase family protein 1Chr12:34470517–34477475 (-)4.626e-11
Glyma.12G186200 hypothetical protein AT3G44350:NAC061:NAC domain containing protein 61 1Chr12:34708678–34710549 (+)1.585e-12
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)8.867e-13
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)8.867e-13
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)7.508e-11
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)3.794e-11
Glyma.14G013500 hypothetical protein AT4G25434:NUDT10:nudix hydrolase homolog 10 1Chr14:1009519–1014238 (+)6.718e-13
Glyma.14G066800 hypothetical protein NA 1Chr14:5511222–5513114 (+)4.608e-12
Glyma.14G069500 hypothetical protein AT5G37810:NIP4;1:NOD26-like intrinsic protein 4;1 1Chr14:5822246–5825628 (-)1.641e-11
Glyma.14G071700 hypothetical protein AT1G19660:AT1G19660:Wound-responsive family protein__AT1G75380:BBD1:bifunctional nuclease in basal defense response 1 1Chr14:6037810–6041899 (+)3.874e-11
Glyma.14G071800 hypothetical protein NA 1Chr14:6040746–6041899 (-)3.874e-11
Glyma.14G075900 hypothetical protein NA 1Chr14:6362111–6364010 (-)1.209e-11
Glyma.14G077100 hypothetical protein AT5G42610:AT5G42610:calcium uniporter (DUF607) 1Chr14:6486139–6488935 (+)1.004e-12
Glyma.14G077200 hypothetical protein AT5G42620:AT5G42620:metalloendopeptidase / zinc ion binding protein 1Chr14:6498564–6506068 (+)1.004e-12
Glyma.14G077300 hypothetical protein AT1G75040:PR5:pathosis-related protein 5 1Chr14:6508609–6520744 (-)1.004e-12
Glyma.14G094200 hypothetical protein AT5G11840:AT5G11840:YCF36, putative (DUF1230) 1Chr14:8770378–8774149 (-)9.432e-13
Glyma.14G094300 hypothetical protein NA 1Chr14:8771316–8772515 (+)9.432e-13
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)1.334e-13
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)1.734e-13
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.263e-16
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)1.734e-13
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)1.734e-13
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)5.752e-13
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.644e-14
Glyma.16G025300 hypothetical protein NA 1Chr16:2438122–2440528 (-)4.015e-15
Glyma.16G025400 hypothetical protein AT2G46430:CNGC3:cyclic nucleotide gated channel 3 1Chr16:2443212–2450834 (-)4.015e-15
Glyma.16G137600 hypothetical protein NA 1Chr16:29468438–29472890 (-)6.72e-12
Glyma.16G138400 hypothetical protein NA 1Chr16:29560913–29562163 (+)6.374e-11
Glyma.16G139000 hypothetical protein NA 1Chr16:29623540–29631451 (+)2.398e-11
Glyma.16G139500 hypothetical protein AT5G66550:AT5G66550:Maf-like protein 1Chr16:29686243–29690410 (-)8.547e-14
Glyma.16G143400 hypothetical protein NA 1Chr16:30337469–30338390 (-)9.826e-12
Glyma.16G144700 hypothetical protein AT5G66960:AT5G66960:Prolyl oligopeptidase family protein 1Chr16:30514629–30519598 (+)7.336e-11
Glyma.16G145100 hypothetical protein NA 1Chr16:30578388–30581421 (-)1.029e-12
Glyma.16G145600 hypothetical protein AT1G11310:MLO2:Seven transmembrane MLO family protein__AT2G39200:MLO12:Seven transmembrane MLO family protein__AT1G6156… 1Chr16:30652378–30659548 (+)1.029e-12
Glyma.16G147000 hypothetical protein NA 1Chr16:30773803–30777822 (-)5.059e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)4.517e-13
Glyma.16G209400 hypothetical protein AT1G17840:ABCG11:white-brown complex-like protein 1Chr16:36871978–36878151 (-)1.409e-11
Glyma.17G064000 hypothetical protein AT2G18840:AT2G18840:Integral membrane Yip1 family protein__AT4G30260:AT4G30260:Integral membrane Yip1 family protein 1Chr17:4924830–4930155 (-)6.244e-12
Glyma.17G064200 hypothetical protein AT5G57500:AT5G57500:Galactosyltransferase family protein 1Chr17:4943412–4944357 (-)6.244e-12
Glyma.17G135100 hypothetical protein AT1G62840:AT1G62840:ankyrin repeat/KH domain protein (DUF1442) 1Chr17:10870710–10872285 (+)1.13e-13
Glyma.17G137100 hypothetical protein AT4G22860:AT4G22860:Cell cycle regulated microtubule associated protein 1Chr17:11065492–11072635 (+)1.685e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)2.263e-11
Glyma.18G266500 hypothetical protein NA 1Chr18:55088284–55091427 (-)7.64e-11
Glyma.19G011600 hypothetical protein NA 1Chr19:1111789–1116419 (+)1.132e-15
Glyma.19G128100 hypothetical protein NA 1Chr19:38728037–38732422 (+)9.229e-11
Glyma.19G128200 hypothetical protein NA 1Chr19:38739769–38743404 (+)5.22e-14
Glyma.19G140800 hypothetical protein AT2G41860:CPK14:calcium-dependent protein kinase 14 1Chr19:40214988–40219723 (-)3.573e-11
Glyma.20G019500 hypothetical protein AT1G21065:AT1G21065:secondary thiamine-phosphate synthase enzyme 1Chr20:2039210–2040459 (+)2.626e-14
Glyma.20G019700 hypothetical protein NA 1Chr20:2047020–2050862 (-)2.84e-13
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)1.657e-14
Glyma.20G098400 hypothetical protein AT1G56340:CRT1a:calreticulin 1a__AT1G09210:CRT1b:calreticulin 1b 1Chr20:34151918–34155417 (+)7.412e-12
Glyma.20G112900 hypothetical protein AT2G39210:AT2G39210:Major facilitator superfamily protein 1Chr20:35498179–35500565 (-)2.818e-11