Soybean mGWAS DBExplore The Genetic Basis Of Soybean Metabolism Glycine max
Overview Annotation GWAS Evidence Associated genes

P32272

Metabolite ID
P32272
Deionized mass
152.0460 Da
Average m/z
153.0536
Average RT
16.6120
Adduct
[M+H]+
Association scope
Overlapping genes only
Associated genes
134
GWAS result file
Available
Open in Soybean Metabolome Repository

Candidate annotations

Search compound candidates by deionized mass and tolerance. Follow compound IDs for database records, or use name searches to explore chemistry and soybean literature. About candidate annotations

GWAS Evidence

Dataset: indexed GWAS records.

Settings

SNP counts, plot highlights, gene associations and downloads use P < 10⁻¹⁰. Changing the threshold updates this page together.

Loading GWAS records…

Loading Manhattan plot…

This Q–Q plot describes the indexed records. For downsampled files, it does not represent the distribution across all tested variants. Data coverage

Loading Q–Q plot…
Loading GWAS summary…

Associated genes

134 genes linked to SNP records with P < 10⁻¹⁰ in the selected scope. Supporting SNP records are counted per feature–gene pair.

Gene ID Alias Description Arabidopsis ortholog Supporting SNP recordsGene interval (1-based)Minimum P
Glyma.19G027000 hypothetical protein NA 4Chr19:3335896–3343744 (+)2.761e-11
Glyma.01G045600 hypothetical protein NA 3Chr01:5242432–5245038 (-)7.041e-13
Glyma.03G023000 hypothetical protein AT4G00220:JLO:Lateral organ boundaries (LOB) domain family protein 3Chr03:2423540–2428634 (-)1.226e-19
Glyma.16G114900 hypothetical protein NA 3Chr16:25456379–25485759 (+)7.247e-11
Glyma.16G118100 hypothetical protein AT2G17570:cPT1:Undecaprenyl pyrophosphate synthetase family protein 3Chr16:26324650–26336836 (+)1.223e-12
Glyma.16G118400 hypothetical protein AT2G17190:AT2G17190:ubiquitin family protein 3Chr16:26356863–26371741 (-)9.043e-11
Glyma.16G189100 hypothetical protein AT1G05190:emb2394:Ribosomal protein L6 family 3Chr16:35170253–35173950 (-)1.132e-17
Glyma.16G196900 hypothetical protein NA 3Chr16:35841279–35846894 (-)6.3e-14
Glyma.01G175500 hypothetical protein AT3G50660:DWF4:Cytochrome P450 superfamily protein 2Chr01:51219681–51224948 (+)6.07e-12
Glyma.03G040600 hypothetical protein AT2G38400:AGT3:alanine:glyoxylate aminotransferase 3 2Chr03:5113019–5121557 (+)2.694e-14
Glyma.04G084800 hypothetical protein AT5G11630:NOXY2:uncharacterized protein 2Chr04:7187985–7192897 (+)1.153e-11
Glyma.08G123500 hypothetical protein NA 2Chr08:9494946–9505931 (-)5.141e-12
Glyma.09G053800 hypothetical protein NA 2Chr09:4737413–4755632 (-)2.612e-11
Glyma.09G060200 hypothetical protein AT5G57150:AT5G57150:basic helix-loop-helix (bHLH) DNA-binding superfamily protein 2Chr09:5571201–5579976 (-)1.609e-11
Glyma.09G277300 hypothetical protein NA 2Chr09:49271634–49276648 (-)5.847e-11
Glyma.14G093100 hypothetical protein NA 2Chr14:8654730–8655892 (-)4.971e-13
Glyma.15G152400 hypothetical protein NA 2Chr15:12641790–12646649 (+)3.498e-12
Glyma.16G196800 hypothetical protein AT5G07250:RBL3:RHOMBOID-like protein 3 2Chr16:35831912–35835153 (+)1.386e-11
Glyma.19G026600 hypothetical protein AT4G13700:PAP23:purple acid phosphatase 23 2Chr19:3303658–3312907 (-)2.761e-11
Glyma.01G045400 hypothetical protein NA 1Chr01:5140834–5144197 (-)1.386e-12
Glyma.01G045700 hypothetical protein AT1G69680:AT1G69680:ran guanine nucleotide release factor, putative (Mog1/PsbP/DUF1795-like photosystem II reaction cen… 1Chr01:5265956–5271379 (-)1.927e-12
Glyma.01G169700 hypothetical protein AT4G36410:UBC17:ubiquitin-conjugating enzyme 17 1Chr01:50715084–50719427 (-)8.993e-11
Glyma.01G169800 hypothetical protein AT4G36400:D2HGDH:FAD-linked oxidases family protein 1Chr01:50726088–50733347 (-)8.993e-11
Glyma.02G086900 hypothetical protein AT3G24130:AT3G24130:Pectin lyase-like superfamily protein 1Chr02:7553127–7557516 (-)7.426e-11
Glyma.02G204700 hypothetical protein AT4G30610:BRS1:alpha/beta-Hydrolases superfamily protein 1Chr02:38993365–39000790 (+)5.971e-11
Glyma.02G205300 hypothetical protein NA 1Chr02:39037472–39038396 (-)1.662e-12
Glyma.02G205400 hypothetical protein AT5G57880:MPS1:multipolar spindle 1 1Chr02:39040135–39043181 (-)2.948e-11
Glyma.03G020800 hypothetical protein AT3G61050:NTMC2T4:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr03:2124895–2135692 (-)9.363e-12
Glyma.03G021400 hypothetical protein AT2G45540:AT2G45540:WD-40 repeat family protein / beige-like protein 1Chr03:2202325–2234931 (+)7.646e-12
Glyma.03G021600 hypothetical protein AT2G45510:CYP704A2:cytochrome P450, family 704, subfamily A, polypeptide 2__AT2G44890:CYP704A1:cytochrome P450, family … 1Chr03:2240686–2246512 (-)6.008e-12
Glyma.03G021700 hypothetical protein AT2G45490:AUR3:ataurora3 1Chr03:2248429–2251737 (+)2.563e-12
Glyma.03G022100 hypothetical protein AT4G32430:AT4G32430:Pentatricopeptide repeat (PPR) superfamily protein 1Chr03:2301675–2307263 (+)2.694e-13
Glyma.04G084200 hypothetical protein AT2G25830:AT2G25830:YebC-like protein 1Chr04:7137351–7146570 (-)8.684e-11
Glyma.04G086600 hypothetical protein NA 1Chr04:7374806–7380808 (+)4.468e-11
Glyma.05G029900 hypothetical protein AT5G62730:AT5G62730:Major facilitator superfamily protein 1Chr05:2565716–2569741 (-)7.742e-11
Glyma.05G124700 hypothetical protein NA 1Chr05:31807311–31817648 (+)9.311e-11
Glyma.05G127200 hypothetical protein AT1G29790:AT1G29790:S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 1Chr05:32014213–32017922 (-)1.371e-13
Glyma.05G127300 hypothetical protein AT1G64520:RPN12a:regulatory particle non-ATPase 12A__AT5G42040:RPN12b:regulatory particle non-ATPase 12B 1Chr05:32021521–32025767 (-)1.004e-13
Glyma.05G127400 hypothetical protein AT1G29850:AT1G29850:double-stranded DNA-binding family protein 1Chr05:32030115–32033716 (+)1.004e-13
Glyma.05G127500 hypothetical protein NA 1Chr05:32041345–32049554 (+)8.568e-18
Glyma.05G127800 hypothetical protein AT4G18240:SS4:starch synthase 4 1Chr05:32125404–32138244 (+)4.587e-17
Glyma.05G127900 SAD1 AT5G48870:SAD1:Small nuclear ribonucleoprotein family protein 1Chr05:32139620–32141770 (-)4.587e-17
Glyma.05G128200 hypothetical protein AT5G46330:FLS2:Leucine-rich receptor-like protein kinase family protein 1Chr05:32158034–32162343 (-)4.587e-17
Glyma.05G130700 hypothetical protein AT2G34560:CCP1:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr05:32376592–32384905 (+)4.443e-11
Glyma.05G131200 hypothetical protein AT5G58230:MSI1:Transducin/WD40 repeat-like superfamily protein 1Chr05:32421116–32425198 (-)4.476e-12
Glyma.05G137500 hypothetical protein NA 1Chr05:33012282–33015297 (-)5.736e-11
Glyma.05G137600 hypothetical protein NA 1Chr05:33018107–33020120 (-)8.783e-11
Glyma.05G220900 hypothetical protein NA 1Chr05:40040654–40043504 (+)2.176e-11
Glyma.05G224700 hypothetical protein NA 1Chr05:40351005–40361888 (+)6.269e-12
Glyma.05G226000 hypothetical protein AT5G19730:AT5G19730:Pectin lyase-like superfamily protein 1Chr05:40458098–40461736 (+)7.292e-12
Glyma.05G231800 ALDH2C1 aldehyde dehydrogenase family 2 member C1 AT3G24503:ALDH2C4:aldehyde dehydrogenase 2C4 1Chr05:40924505–40929251 (+)1.156e-11
Glyma.05G236400 hypothetical protein AT1G23210:GH9B6:glycosyl hydrolase 9B6__AT1G70710:GH9B1:glycosyl hydrolase 9B1 1Chr05:41274513–41279615 (-)1.517e-14
Glyma.05G236700 hypothetical protein AT4G33760:AT4G33760:tRNA synthetase class II (D, K and N) family protein 1Chr05:41301540–41310727 (+)4.278e-16
Glyma.05G237800 hypothetical protein AT1G48790:AMSH1:associated molecule with the SH3 domain of STAM 1 1Chr05:41406807–41413022 (-)1.996e-12
Glyma.06G019800 hypothetical protein NA 1Chr06:1494230–1501925 (+)1.026e-11
Glyma.06G112300 hypothetical protein AT1G44780:AT1G44780:translation initiation factor__AT4G08310:AT4G08310:DNA ligase 1Chr06:9113982–9118848 (-)1.035e-11
Glyma.06G112600 hypothetical protein AT1G77620:AT1G77620:P-loop containing nucleoside triphosphate hydrolases superfamily protein 1Chr06:9134358–9144986 (+)1.035e-11
Glyma.06G112700 hypothetical protein AT1G44760:AT1G44760:Adenine nucleotide alpha hydrolases-like superfamily protein 1Chr06:9156973–9158659 (+)1.035e-11
Glyma.06G131700 hypothetical protein NA 1Chr06:10850105–10855203 (+)7.329e-11
Glyma.06G132100 hypothetical protein NA 1Chr06:10873977–10879178 (-)7.329e-11
Glyma.08G122000 hypothetical protein AT5G46400:PRP39-2:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr08:9397717–9410004 (+)2.084e-13
Glyma.08G122200 hypothetical protein NA 1Chr08:9416766–9429995 (-)5.141e-12
Glyma.08G122300 hypothetical protein AT1G29390:COR314-TM2:cold regulated 314 thylakoid membrane 2 1Chr08:9435391–9437279 (+)5.141e-12
Glyma.08G122500 hypothetical protein NA 1Chr08:9441329–9445315 (-)5.141e-12
Glyma.08G122700 hypothetical protein AT1G29350:AT1G29350:RNA polymerase II degradation factor-like protein (DUF1296) 1Chr08:9452604–9458932 (+)5.141e-12
Glyma.09G058900 hypothetical protein NA 1Chr09:5397968–5404650 (-)5.791e-12
Glyma.09G059600 hypothetical protein AT4G30010:AT4G30010:ATP-dependent RNA helicase 1Chr09:5504630–5507434 (+)8.182e-11
Glyma.09G059700 hypothetical protein AT4G29940:PRHA:pathosis related homeodomain protein A 1Chr09:5513108–5520158 (+)8.182e-11
Glyma.09G080200 hypothetical protein NA 1Chr09:9256042–9263239 (-)7.574e-13
Glyma.09G082000 hypothetical protein NA 1Chr09:9638564–9650178 (+)5.187e-16
Glyma.09G084300 hypothetical protein AT2G34680:AIR9:Outer arm dynein light chain 1 protein 1Chr09:10129602–10197250 (-)7.716e-15
Glyma.09G246700 hypothetical protein AT1G22840:CYTC-1:CYTOCHROME C-1 1Chr09:46835469–46838091 (-)7.501e-11
Glyma.09G250000 hypothetical protein NA 1Chr09:47096937–47099390 (-)1.264e-11
Glyma.09G270400 hypothetical protein NA 1Chr09:48735991–48740879 (+)8.155e-11
Glyma.09G270500 hypothetical protein AT1G09780:iPGAM1:Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent 1Chr09:48745649–48751140 (+)7.815e-11
Glyma.09G282900 hypothetical protein AT2G29090:CYP707A2:cytochrome P450, family 707, subfamily A, polypeptide 2 1Chr09:49863377–49871270 (+)7.406e-12
Glyma.10G078700 hypothetical protein NA 1Chr10:8882318–8903950 (+)3.155e-12
Glyma.10G079100 hypothetical protein NA 1Chr10:8960669–8962364 (-)3.155e-12
Glyma.10G079800 hypothetical protein NA 1Chr10:9223520–9228511 (-)3.155e-12
Glyma.10G080000 hypothetical protein AT3G11660:NHL1:NDR1/HIN1-like 1__AT3G52470:AT3G52470:Late embryosis abundant (LEA) hydroxyproline-rich glycoprotein fam… 1Chr10:9258476–9260697 (-)3.155e-12
Glyma.10G081200 hypothetical protein NA 1Chr10:9600771–9603988 (-)2.892e-12
Glyma.10G081700 hypothetical protein NA 1Chr10:9752508–9758422 (+)1.903e-12
Glyma.11G024800 hypothetical protein NA 1Chr11:1754343–1759398 (+)7.006e-13
Glyma.11G048300 hypothetical protein AT4G37640:ACA2:calcium ATPase 2 1Chr11:3601241–3607177 (+)1.705e-14
Glyma.11G050300 hypothetical protein AT2G23093:AT2G23093:Major facilitator superfamily protein 1Chr11:3765453–3771565 (+)9.238e-13
Glyma.11G050500 hypothetical protein AT5G67370:CGLD27:DUF1230 family protein (DUF1230) 1Chr11:3778152–3782174 (+)9.237e-13
Glyma.11G050600 hypothetical protein NA 1Chr11:3779988–3786583 (-)9.237e-13
Glyma.11G051600 hypothetical protein NA 1Chr11:3857225–3859564 (-)9.238e-13
Glyma.12G054700 hypothetical protein AT3G45140:LOX2:lipoxygenase 2 1Chr12:3949453–3957386 (-)2.676e-11
Glyma.12G183400 hypothetical protein NA 1Chr12:34427496–34440319 (-)1.756e-13
Glyma.12G197600 hypothetical protein AT4G03210:XTH9:xyloglucan endotransglucosylase/hydrolase 9 1Chr12:35879106–35881779 (+)8.32e-11
Glyma.12G202200 hypothetical protein AT2G20860:LIP1:lipoic acid synthase 1 1Chr12:36267599–36271584 (+)1.417e-16
Glyma.12G202300 hypothetical protein NA 1Chr12:36275438–36276838 (+)1.417e-16
Glyma.12G202400 hypothetical protein AT4G03415:PP2C52:Protein phosphatase 2C family protein 1Chr12:36289704–36295084 (-)2.801e-13
Glyma.12G203600 EXPB8 AT2G20750:EXPB1:expansin B1 1Chr12:36390283–36394245 (-)6.316e-11
Glyma.12G204000 hypothetical protein AT1G03687:AT1G03687:DTW domain-containing protein 1Chr12:36428558–36432835 (+)5.221e-11
Glyma.12G204400 hypothetical protein AT4G03560:TPC1:two-pore channel 1 1Chr12:36473422–36498915 (+)5.221e-11
Glyma.13G156000 hypothetical protein AT2G07560:HA6:H[+]-ATPase 6__AT3G42640:HA8:H[+]-ATPase 8 1Chr13:27104338–27109785 (+)1.083e-13
Glyma.13G203900 hypothetical protein NA 1Chr13:31793697–31796601 (-)1.673e-11
Glyma.14G094900 hypothetical protein AT1G60960:IRT3:iron regulated transporter 3 1Chr14:8824846–8827258 (-)4.72e-11
Glyma.14G201600 hypothetical protein NA 1Chr14:46703283–46706500 (+)6.211e-11
Glyma.14G201700 hypothetical protein NA 1Chr14:46711634–46715644 (-)6.211e-11
Glyma.15G121100 hypothetical protein NA 1Chr15:9567797–9570248 (+)8.842e-14
Glyma.15G121300 hypothetical protein AT5G47760:PGLP2:2-phosphoglycolate phosphatase 2 1Chr15:9584685–9590201 (-)1.322e-13
Glyma.15G121500 hypothetical protein AT1G03370:AT1G03370:C2 calcium/lipid-binding and GRAM domain containing protein 1Chr15:9602794–9615281 (+)8.842e-14
Glyma.15G121800 hypothetical protein NA 1Chr15:9643746–9648073 (+)8.842e-14
Glyma.15G124000 hypothetical protein NA 1Chr15:9845097–9849312 (-)2.472e-11
Glyma.15G124500 MLO-like protein 13 AT4G24250:MLO13:Seven transmembrane MLO family protein 1Chr15:9888761–9894068 (-)2.382e-18
Glyma.15G152200 hypothetical protein NA 1Chr15:12632591–12637748 (+)3.498e-12
Glyma.15G152800 hypothetical protein NA 1Chr15:12669438–12671888 (+)3.498e-12
Glyma.15G152900 hypothetical protein AT4G15755:AT4G15755:Calcium-dependent lipid-binding (CaLB domain) family protein 1Chr15:12680146–12681864 (-)4.182e-12
Glyma.16G075800 hypothetical protein AT4G19420:AT4G19420:Pectinacetylesterase family protein 1Chr16:7646131–7651379 (+)5.716e-11
Glyma.16G115300 hypothetical protein NA 1Chr16:25584135–25585667 (+)7.248e-11
Glyma.16G115400 hypothetical protein NA 1Chr16:25604547–25606360 (+)7.248e-11
Glyma.16G115500 hypothetical protein NA 1Chr16:25622503–25630816 (+)7.248e-11
Glyma.16G115600 hypothetical protein AT1G13410:AT1G13410:Tetratricopeptide repeat (TPR)-like superfamily protein 1Chr16:25661245–25664376 (-)7.248e-11
Glyma.16G116500 hypothetical protein AT4G16444:AT4G16444:tail-anchored protein insertion receptor WRB-like protein 1Chr16:26057276–26069534 (+)4.643e-11
Glyma.16G117400 hypothetical protein NA 1Chr16:26234552–26238233 (-)1.018e-12
Glyma.16G118200 hypothetical protein NA 1Chr16:26337169–26338323 (+)9.044e-11
Glyma.16G118600 hypothetical protein NA 1Chr16:26442194–26445922 (+)9.043e-11
Glyma.16G119300 hypothetical protein NA 1Chr16:26643902–26644416 (+)4.857e-11
Glyma.16G119400 hypothetical protein NA 1Chr16:26684278–26687087 (+)7.639e-13
Glyma.16G134500 hypothetical protein NA 1Chr16:29128092–29130458 (-)3.686e-12
Glyma.16G179800 hypothetical protein AT5G52520:OVA6:Class II aaRS and biotin synthetases superfamily protein 1Chr16:34022480–34027055 (-)3.005e-13
Glyma.16G189200 hypothetical protein AT3G48970:AT3G48970:Heavy metal transport/detoxification superfamily protein 1Chr16:35177846–35179798 (+)6.615e-11
Glyma.16G196200 HSF-32 heat stress transcription factor 32 AT5G62020:HSFB2A:heat shock transcription factor B2A 1Chr16:35760178–35761852 (+)2.029e-13
Glyma.17G215500 KNAT5 NA 1Chr17:36212363–36217688 (-)3.088e-12
Glyma.18G073500 hypothetical protein AT3G44730:KP1:kinesin-like protein 1 1Chr18:6971929–6982758 (+)4.685e-11
Glyma.18G112600 hypothetical protein NA 1Chr18:13398219–13405422 (+)5.436e-11
Glyma.18G201700 hypothetical protein NA 1Chr18:48175554–48180264 (+)8.618e-11
Glyma.18G238000 hypothetical protein AT1G01490:AT1G01490:Heavy metal transport/detoxification superfamily protein 1Chr18:52679724–52682816 (+)6.923e-12
Glyma.20G013100 hypothetical protein NA 1Chr20:1134080–1135710 (-)1.219e-11
Glyma.20G019800 hypothetical protein AT1G49350:AT1G49350:pfkB-like carbohydrate kinase family protein 1Chr20:2051817–2057262 (+)2.494e-11
Glyma.20G120200 hypothetical protein NA 1Chr20:36268998–36282456 (-)3.119e-11